miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 3' -55.8 NC_005905.1 + 19837 0.66 0.799923
Target:  5'- gGCUUGGgCCAAGUUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19508 0.75 0.29188
Target:  5'- gGCUUGGaCCAAGCUAGCCUGGa---- -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGACCagagc -5'
28319 3' -55.8 NC_005905.1 + 8726 0.91 0.025684
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCaCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGaGC- -5'
28319 3' -55.8 NC_005905.1 + 9165 1.02 0.004414
Target:  5'- aGCUUGGCCCAAGCCGACCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 49486 0.7 0.582849
Target:  5'- ---cGGCUUGAGCCuACCgGGUUUCGg -3'
miRNA:   3'- cgaaCCGGGUUCGGuUGGaCCAGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17195 0.7 0.561749
Target:  5'- gGCUUGGgCCAAGCUAGCUUcaacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcc-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17305 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17415 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19573 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 20182 0.75 0.299047
Target:  5'- gGCUUGGgCCAAGCUAGCCUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19947 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17699 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19772 0.67 0.761302
Target:  5'- gGCUUGGgCCAAGCUAGCCUcGa---- -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcCagagc -5'
28319 3' -55.8 NC_005905.1 + 20122 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17634 0.67 0.7103
Target:  5'- gGCUUGGaCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17525 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 9014 0.74 0.369644
Target:  5'- aGCUaacucuGCCCAAGCCGGgCUGGaCUCGa -3'
miRNA:   3'- -CGAac----CGGGUUCGGUUgGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 8836 0.89 0.035181
Target:  5'- aGCUUGGCCCAAGCCggUUUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17764 0.67 0.7103
Target:  5'- gGCUUGGaCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28319 3' -55.8 NC_005905.1 + 22181 0.7 0.561749
Target:  5'- ----aGCCCAGGCCGGCUUGGg-UCGa -3'
miRNA:   3'- cgaacCGGGUUCGGUUGGACCagAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.