Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28319 | 5' | -55 | NC_005905.1 | + | 21722 | 0.96 | 0.016347 |
Target: 5'- uGUCGAAGCUAACUUGGUUCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 21677 | 0.94 | 0.019993 |
Target: 5'- cGUCGAAGCUAACUUGGCCaAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGgUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 20132 | 0.66 | 0.854063 |
Target: 5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3' miRNA: 3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 20072 | 1.05 | 0.003432 |
Target: 5'- uGUCGAGGCUAGCUUGGCCCAAGCCGGu -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 20012 | 1.06 | 0.003334 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19957 | 0.66 | 0.854063 |
Target: 5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3' miRNA: 3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19948 | 0.93 | 0.02308 |
Target: 5'- uGUCGAAGCUAGCU-GGCCCAAGCCGa -3' miRNA: 3'- -CAGCUUCGAUUGAgCCGGGUUCGGCc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19903 | 1.06 | 0.003146 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGu -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19892 | 0.66 | 0.854063 |
Target: 5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3' miRNA: 3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19838 | 1.06 | 0.003334 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19773 | 1.06 | 0.003334 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19763 | 0.67 | 0.779653 |
Target: 5'- ---cAAGCUAGCcucgacaaauuuuaUCGaGUCCAGGCCGGc -3' miRNA: 3'- cagcUUCGAUUG--------------AGC-CGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19728 | 1.06 | 0.003146 |
Target: 5'- uGUCGAAGCUAACUUGGCCCAAGCCGGu -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19663 | 1.05 | 0.003637 |
Target: 5'- uGUCGAGGCUAGCUUGGCCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19618 | 1.06 | 0.003334 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19608 | 0.68 | 0.741948 |
Target: 5'- ---cAAGCUAGCuucacaaauuuuaUCGaGUCCAAGCCGGc -3' miRNA: 3'- cagcUUCGAUUG-------------AGC-CGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19553 | 0.89 | 0.043256 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGacgacCUGGa -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUC-----GGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19508 | 1.06 | 0.003146 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGu -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19463 | 1.06 | 0.003334 |
Target: 5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' |
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28319 | 5' | -55 | NC_005905.1 | + | 19399 | 0.87 | 0.064232 |
Target: 5'- aUCcAGGCUAGCUUGGUCCAAGCCGGc -3' miRNA: 3'- cAGcUUCGAUUGAGCCGGGUUCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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