miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 5' -55 NC_005905.1 + 54451 0.67 0.772847
Target:  5'- cGUgGAAGCUAuagaaaaaaAUUUGGCCgaAAGUCGGu -3'
miRNA:   3'- -CAgCUUCGAU---------UGAGCCGGg-UUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49332 0.87 0.062453
Target:  5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49287 0.87 0.062453
Target:  5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49242 0.83 0.111865
Target:  5'- aUUGAGGCUcGgUCGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49197 0.87 0.062453
Target:  5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49152 0.83 0.111865
Target:  5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49107 0.83 0.111865
Target:  5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49062 0.87 0.062453
Target:  5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49017 0.83 0.111865
Target:  5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 48972 0.83 0.111865
Target:  5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 48928 0.84 0.094864
Target:  5'- -cCGAAGCUcGgUCGGCUCAAGCCGGu -3'
miRNA:   3'- caGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 22156 0.66 0.838188
Target:  5'- aGUCGAGGCcugcuuuggccaaguUAGCuucgacaaauuuuaUCGaGUCUAGGCCGGu -3'
miRNA:   3'- -CAGCUUCG---------------AUUG--------------AGC-CGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 22064 0.66 0.854063
Target:  5'- cUCGA--CUcAUUCGaCCCAAGCCGGc -3'
miRNA:   3'- cAGCUucGAuUGAGCcGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 22036 0.84 0.097518
Target:  5'- uGUCGAAGCUAACUUGGCCaaagCAGGCCu- -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGG----GUUCGGcc -5'
28319 5' -55 NC_005905.1 + 21991 0.94 0.020576
Target:  5'- cGUCGAAGCUAACUUGGCCCAAaCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUcGGCC- -5'
28319 5' -55 NC_005905.1 + 21947 0.92 0.030731
Target:  5'- uGUCGAAGCU-ACUUGGCUCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAuUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 21902 0.8 0.181296
Target:  5'- cGUCGAAGCUAACUUGGUUCAAaCCGa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUcGGCc -5'
28319 5' -55 NC_005905.1 + 21857 1.06 0.003057
Target:  5'- cGUCGAAGCUAACUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 21812 1.06 0.003057
Target:  5'- cGUCGAAGCUAACUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 21767 1.06 0.003057
Target:  5'- cGUCGAAGCUAACUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.