miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28320 5' -51.2 NC_005905.1 + 17364 0.66 0.965789
Target:  5'- aUCGA-GUUcAGCcCGGCUUAGGCCGa -3'
miRNA:   3'- cAGUUuCGA-UUGaGCCGGAUUCGGCc -5'
28320 5' -51.2 NC_005905.1 + 17474 0.66 0.965789
Target:  5'- aUCGA-GUUcAGCcCGGCUUAGGCCGa -3'
miRNA:   3'- cAGUUuCGA-UUGaGCCGGAUUCGGCc -5'
28320 5' -51.2 NC_005905.1 + 17584 0.66 0.965789
Target:  5'- aUCGA-GUUcAGCcCGGCUUAGGCCGa -3'
miRNA:   3'- cAGUUuCGA-UUGaGCCGGAUUCGGCc -5'
28320 5' -51.2 NC_005905.1 + 49365 0.67 0.924028
Target:  5'- aUCAAGuCUaGAC-CGGCUUGAGCCGa -3'
miRNA:   3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5'
28320 5' -51.2 NC_005905.1 + 22156 0.67 0.918635
Target:  5'- aGUCGAGGCcugcuuuggccaaguUAGCuucgacaaauuuuaUCGaGUCUAGGCCGGu -3'
miRNA:   3'- -CAGUUUCG---------------AUUG--------------AGC-CGGAUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 54451 0.67 0.918022
Target:  5'- cGUgGAAGCUAuagaaaaaaAUUUGGCCgaAAGUCGGu -3'
miRNA:   3'- -CAgUUUCGAU---------UGAGCCGGa-UUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 49455 0.68 0.905183
Target:  5'- aUCAAAuCUgGAC-CGGCUUGAGCCGa -3'
miRNA:   3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5'
28320 5' -51.2 NC_005905.1 + 49050 0.68 0.905183
Target:  5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3'
miRNA:   3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5'
28320 5' -51.2 NC_005905.1 + 49410 0.68 0.905183
Target:  5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3'
miRNA:   3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5'
28320 5' -51.2 NC_005905.1 + 49185 0.68 0.905183
Target:  5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3'
miRNA:   3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5'
28320 5' -51.2 NC_005905.1 + 49320 0.68 0.905183
Target:  5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3'
miRNA:   3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5'
28320 5' -51.2 NC_005905.1 + 17868 0.71 0.767429
Target:  5'- aUCGAGuuUAGCUCGGCUUGuGCCGa -3'
miRNA:   3'- cAGUUUcgAUUGAGCCGGAUuCGGCc -5'
28320 5' -51.2 NC_005905.1 + 21902 0.71 0.746836
Target:  5'- cGUCGAAGCUAACUUGGUUcAAaCCGa -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUcGGCc -5'
28320 5' -51.2 NC_005905.1 + 9234 0.74 0.627674
Target:  5'- -----uGCUAACUCuGCCcAAGCCGGg -3'
miRNA:   3'- caguuuCGAUUGAGcCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 49242 0.74 0.627674
Target:  5'- aUUGAGGCUcGgUCGGCUcAAGCCGGu -3'
miRNA:   3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 48972 0.75 0.55114
Target:  5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3'
miRNA:   3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 49152 0.75 0.55114
Target:  5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3'
miRNA:   3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 49107 0.75 0.55114
Target:  5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3'
miRNA:   3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 49017 0.75 0.55114
Target:  5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3'
miRNA:   3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 17022 0.75 0.540399
Target:  5'- -cCAuaaCUAACUCGGCUcAAGCCGGg -3'
miRNA:   3'- caGUuucGAUUGAGCCGGaUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.