Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28320 | 5' | -51.2 | NC_005905.1 | + | 17364 | 0.66 | 0.965789 |
Target: 5'- aUCGA-GUUcAGCcCGGCUUAGGCCGa -3' miRNA: 3'- cAGUUuCGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 17474 | 0.66 | 0.965789 |
Target: 5'- aUCGA-GUUcAGCcCGGCUUAGGCCGa -3' miRNA: 3'- cAGUUuCGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 17584 | 0.66 | 0.965789 |
Target: 5'- aUCGA-GUUcAGCcCGGCUUAGGCCGa -3' miRNA: 3'- cAGUUuCGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49365 | 0.67 | 0.924028 |
Target: 5'- aUCAAGuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 22156 | 0.67 | 0.918635 |
Target: 5'- aGUCGAGGCcugcuuuggccaaguUAGCuucgacaaauuuuaUCGaGUCUAGGCCGGu -3' miRNA: 3'- -CAGUUUCG---------------AUUG--------------AGC-CGGAUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 54451 | 0.67 | 0.918022 |
Target: 5'- cGUgGAAGCUAuagaaaaaaAUUUGGCCgaAAGUCGGu -3' miRNA: 3'- -CAgUUUCGAU---------UGAGCCGGa-UUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49320 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49185 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49455 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUgGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49410 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49050 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 17868 | 0.71 | 0.767429 |
Target: 5'- aUCGAGuuUAGCUCGGCUUGuGCCGa -3' miRNA: 3'- cAGUUUcgAUUGAGCCGGAUuCGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 21902 | 0.71 | 0.746836 |
Target: 5'- cGUCGAAGCUAACUUGGUUcAAaCCGa -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUcGGCc -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49242 | 0.74 | 0.627674 |
Target: 5'- aUUGAGGCUcGgUCGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 9234 | 0.74 | 0.627674 |
Target: 5'- -----uGCUAACUCuGCCcAAGCCGGg -3' miRNA: 3'- caguuuCGAUUGAGcCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49017 | 0.75 | 0.55114 |
Target: 5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49152 | 0.75 | 0.55114 |
Target: 5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 48972 | 0.75 | 0.55114 |
Target: 5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 49107 | 0.75 | 0.55114 |
Target: 5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28320 | 5' | -51.2 | NC_005905.1 | + | 17022 | 0.75 | 0.540399 |
Target: 5'- -cCAuaaCUAACUCGGCUcAAGCCGGg -3' miRNA: 3'- caGUuucGAUUGAGCCGGaUUCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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