miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 3' -55 NC_005905.1 + 17998 0.66 0.824193
Target:  5'- aCUUGaCagAAaCCGGCCUGAACUCGg -3'
miRNA:   3'- cGAACcGggUUcGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 22181 0.72 0.494693
Target:  5'- ----aGCCCAGGCCGGCUUGGG-UCGa -3'
miRNA:   3'- cgaacCGGGUUCGGCCGGAUUUgAGC- -5'
28323 3' -55 NC_005905.1 + 9014 0.83 0.111561
Target:  5'- aGCUaacucuGCCCAAGCCGGgCUGGACUCGa -3'
miRNA:   3'- -CGAac----CGGGUUCGGCCgGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 8945 1.11 0.001205
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGACUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGCCGGAUUUGAGC- -5'
28323 3' -55 NC_005905.1 + 17415 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 17525 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 17711 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 19739 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 20134 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 20182 0.72 0.504815
Target:  5'- gGCUUGGgCCAAGCUaGCCUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 17646 0.7 0.620605
Target:  5'- ---cGaGUCCAGGCCGGCUUGGAC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 19959 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 21843 0.66 0.81517
Target:  5'- ---cGaGUCUAGGCCGGCUUGAAC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 19508 0.7 0.60987
Target:  5'- gGCUUGGaCCAAGCUaGCCUGGAUa-- -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGAUUUGagc -5'
28323 3' -55 NC_005905.1 + 17195 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcaacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 19894 0.69 0.674241
Target:  5'- ---cGaGUCCAGGCCGGCUUGGGC-Ca -3'
miRNA:   3'- cgaaC-CGGGUUCGGCCGGAUUUGaGc -5'
28323 3' -55 NC_005905.1 + 19772 0.7 0.599153
Target:  5'- gGCUUGGgCCAAGCUaGCCUcGACa-- -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGAuUUGagc -5'
28323 3' -55 NC_005905.1 + 9234 0.76 0.294344
Target:  5'- uGCUaacucuGCCCAAGCCGGgCUAAAUUCa -3'
miRNA:   3'- -CGAac----CGGGUUCGGCCgGAUUUGAGc -5'
28323 3' -55 NC_005905.1 + 17305 0.67 0.787041
Target:  5'- gGCUUGGgCCAAGCUaGCUUcgacAAAuCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGcCGGA----UUU-GAGC- -5'
28323 3' -55 NC_005905.1 + 18044 0.67 0.777344
Target:  5'- cCUUccuCCCAAGCCaGCCUAGACUa- -3'
miRNA:   3'- cGAAcc-GGGUUCGGcCGGAUUUGAgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.