miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 5' -52.5 NC_005905.1 + 17745 1.09 0.00294
Target:  5'- uGUCGAAGCUAACUCGGCACAAGCCGAg -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGUGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 17130 0.99 0.015475
Target:  5'- uGUCGAAGCUAACUCGGCcCAAGCCGGg -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 9175 0.96 0.024079
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGAc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21767 0.95 0.028719
Target:  5'- cGUCGAAGCUAACUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21812 0.95 0.028719
Target:  5'- cGUCGAAGCUAACUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21857 0.95 0.028719
Target:  5'- cGUCGAAGCUAACUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 8801 0.95 0.028719
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGg -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 19728 0.94 0.030454
Target:  5'- uGUCGAAGCUAACUUGGCcCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 19903 0.94 0.030454
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 19508 0.94 0.030454
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 8846 0.94 0.030454
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 8736 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 8955 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 9130 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 20012 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 19838 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 19773 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 19618 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 19463 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 17590 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.