miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 5' -52.5 NC_005905.1 + 8691 0.81 0.214311
Target:  5'- uGUCGAAGCUAAaUCGGUcCAAGCCGu -3'
miRNA:   3'- -CAGCUUCGAUUgAGCCGuGUUCGGCu -5'
28323 5' -52.5 NC_005905.1 + 8736 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 8801 0.95 0.028719
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGg -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 8846 0.94 0.030454
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 8910 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 8955 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 9020 0.88 0.081573
Target:  5'- uGUCGAAGCUAACUCuGCcCAAGCCGGg -3'
miRNA:   3'- -CAGCUUCGAUUGAGcCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 9065 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCuCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 9130 0.94 0.03136
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 9175 0.96 0.024079
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCGAc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 9234 0.66 0.908075
Target:  5'- -----uGCUAACUCuGCcCAAGCCGGg -3'
miRNA:   3'- cagcuuCGAUUGAGcCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11217 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11282 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11347 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11412 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11477 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11542 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11607 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11671 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11736 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.