miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 5' -52.5 NC_005905.1 + 49332 0.8 0.244142
Target:  5'- aUCGAGGCUcGgUCGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49287 0.8 0.244142
Target:  5'- aUCGAGGCUcGgUCGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49242 0.76 0.407253
Target:  5'- aUUGAGGCUcGgUCGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49197 0.8 0.244142
Target:  5'- aUCGAGGCUcGgUCGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49152 0.76 0.407253
Target:  5'- aUCGAGGCUcGgUUGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49107 0.76 0.407253
Target:  5'- aUCGAGGCUcGgUUGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49062 0.8 0.244142
Target:  5'- aUCGAGGCUcGgUCGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 49017 0.76 0.407253
Target:  5'- aUCGAGGCUcGgUUGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 48972 0.76 0.407253
Target:  5'- aUCGAGGCUcGgUUGGCuCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 48928 0.77 0.354317
Target:  5'- -cCGAAGCUcGgUCGGCuCAAGCCGGu -3'
miRNA:   3'- caGCUUCGAuUgAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 22036 0.87 0.096729
Target:  5'- uGUCGAAGCUAACUUGGCcaaaGCAGGCCu- -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCG----UGUUCGGcu -5'
28323 5' -52.5 NC_005905.1 + 21991 0.82 0.187662
Target:  5'- cGUCGAAGCUAACUUGGCcCAAaCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUcGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21947 0.85 0.121102
Target:  5'- uGUCGAAGCU-ACUUGGCuCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAuUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21902 0.81 0.208733
Target:  5'- cGUCGAAGCUAACUUGGUuCAAaCCGAa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUcGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21857 0.95 0.028719
Target:  5'- cGUCGAAGCUAACUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21812 0.95 0.028719
Target:  5'- cGUCGAAGCUAACUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21767 0.95 0.028719
Target:  5'- cGUCGAAGCUAACUUGGCcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21764 0.66 0.920595
Target:  5'- -aCGAAGCUucGACguguucagCGaGUAUAGGCCGGc -3'
miRNA:   3'- caGCUUCGA--UUGa-------GC-CGUGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21722 0.91 0.050006
Target:  5'- uGUCGAAGCUAACUUGGUuCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21677 0.88 0.083931
Target:  5'- cGUCGAAGCUAACUUGGCcaAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGugUUCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.