Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28323 | 5' | -52.5 | NC_005905.1 | + | 17195 | 0.89 | 0.06302 |
Target: 5'- uGUCGAAGCUAGCUUGGCcCAAGCCa- -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGcu -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 19773 | 0.94 | 0.03136 |
Target: 5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 19838 | 0.94 | 0.03136 |
Target: 5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 20012 | 0.94 | 0.03136 |
Target: 5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 20072 | 0.94 | 0.033251 |
Target: 5'- uGUCGAGGCUAGCUUGGCcCAAGCCGGu -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 19663 | 0.93 | 0.034238 |
Target: 5'- uGUCGAGGCUAGCUUGGCcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 17525 | 0.91 | 0.050006 |
Target: 5'- uGUCGAAGCUAGCUUGGUcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 17655 | 0.91 | 0.050006 |
Target: 5'- uGUCGAAGCUAGCUUGGUcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 21722 | 0.91 | 0.050006 |
Target: 5'- uGUCGAAGCUAACUUGGUuCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 19618 | 0.94 | 0.03136 |
Target: 5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 19463 | 0.94 | 0.03136 |
Target: 5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 17700 | 0.94 | 0.03136 |
Target: 5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 17130 | 0.99 | 0.015475 |
Target: 5'- uGUCGAAGCUAACUCGGCcCAAGCCGGg -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 21767 | 0.95 | 0.028719 |
Target: 5'- cGUCGAAGCUAACUUGGCcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 21812 | 0.95 | 0.028719 |
Target: 5'- cGUCGAAGCUAACUUGGCcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 21857 | 0.95 | 0.028719 |
Target: 5'- cGUCGAAGCUAACUUGGCcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 19508 | 0.94 | 0.030454 |
Target: 5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGu -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 19903 | 0.94 | 0.030454 |
Target: 5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGu -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 19728 | 0.94 | 0.030454 |
Target: 5'- uGUCGAAGCUAACUUGGCcCAAGCCGGu -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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28323 | 5' | -52.5 | NC_005905.1 | + | 17590 | 0.94 | 0.03136 |
Target: 5'- uGUCGAAGCUAGCUUGGCcCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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