Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28325 | 3' | -58.2 | NC_005905.1 | + | 8832 | 0.98 | 0.005153 |
Target: 5'- uGGCCCAAGCCGGUUUGGACUCGGUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 8722 | 0.97 | 0.00578 |
Target: 5'- uGGCCCAAGCCGGCCUGGACaCGGUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGaGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11204 | 0.96 | 0.007064 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11334 | 0.96 | 0.007064 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11269 | 0.96 | 0.007064 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11464 | 0.96 | 0.007064 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11529 | 0.96 | 0.007064 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11658 | 0.96 | 0.007064 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11594 | 0.96 | 0.007064 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11723 | 0.96 | 0.007064 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11788 | 0.96 | 0.007064 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11399 | 0.96 | 0.007064 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11918 | 0.96 | 0.007064 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11853 | 0.96 | 0.007064 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 19961 | 0.96 | 0.007269 |
Target: 5'- uGGCCCAAGCCGaCCUGGACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCcGGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 21781 | 0.96 | 0.007481 |
Target: 5'- uGGCCCAAGCCGGCCUaGACUCGGUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 21871 | 0.96 | 0.007481 |
Target: 5'- uGGCCCAAGCCGGCCUaGACUCGGUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 21826 | 0.96 | 0.007481 |
Target: 5'- uGGCCCAAGCCGGCCUaGACUCGGUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 9005 | 0.95 | 0.008389 |
Target: 5'- uGCCCAAGCCGGgCUGGACUCGAUAAa -3' miRNA: 3'- cCGGGUUCGGCCgGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 9161 | 0.95 | 0.008632 |
Target: 5'- uGGCCCAAGCCGaCCUGGACUCGGUAAa -3' miRNA: 3'- -CCGGGUUCGGCcGGACCUGAGCUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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