miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28326 5' -51.7 NC_005905.1 + 17778 0.67 0.931167
Target:  5'- aUCGaaUCcAGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- -AGC--AGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17213 0.74 0.588862
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AGC-AGCU-----UCGAUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17433 0.74 0.588862
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AGC-AGCU-----UCGAUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 8848 1.1 0.00328
Target:  5'- aUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AGCAGCUUCGAUUGAACCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21931 0.68 0.870845
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21976 0.68 0.870845
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17644 0.7 0.790997
Target:  5'- -aGUCcAGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 19518 0.7 0.790997
Target:  5'- -aGUCcAGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17709 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 20132 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 19782 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 18011 0.73 0.643558
Target:  5'- cUCGUCaAAGCUAACUUgacagaaaccGGCCUgaacucgguuuAAGCCg -3'
miRNA:   3'- -AGCAGcUUCGAUUGAA----------CCGGG-----------UUCGG- -5'
28326 5' -51.7 NC_005905.1 + 9234 0.67 0.931167
Target:  5'- -------uGCUAACUcuGCCCAAGCCg -3'
miRNA:   3'- agcagcuuCGAUUGAacCGGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 19892 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 22156 0.67 0.919645
Target:  5'- -aGUCGAGGCcuGCuUUGGCCaaguuAGCUu -3'
miRNA:   3'- agCAGCUUCGauUG-AACCGGgu---UCGG- -5'
28326 5' -51.7 NC_005905.1 + 20067 0.7 0.78117
Target:  5'- -aGUCcAGGUcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 19957 0.73 0.621643
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17323 0.74 0.588862
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AGC-AGCU-----UCGAUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 21886 0.68 0.870845
Target:  5'- -aGUCuAGGCcGGCUUGGgCCAAGUUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5'
28326 5' -51.7 NC_005905.1 + 17819 0.7 0.800659
Target:  5'- -aGUUuAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- agCAGcUUCGaUUGAACCgGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.