miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28328 3' -51.9 NC_005905.1 + 16943 0.67 0.913473
Target:  5'- -aUUGGCUgAAGCUGGUUUuuauuacacAGGCUUu -3'
miRNA:   3'- ccAACCGAgUUCGGCCAGA---------UCUGAAc -5'
28328 3' -51.9 NC_005905.1 + 17420 0.68 0.862849
Target:  5'- aGGUUGGCUUggGCCaagCUAG-CUUc -3'
miRNA:   3'- -CCAACCGAGuuCGGccaGAUCuGAAc -5'
28328 3' -51.9 NC_005905.1 + 17310 0.68 0.862849
Target:  5'- aGGUUGGCUUggGCCaagCUAG-CUUc -3'
miRNA:   3'- -CCAACCGAGuuCGGccaGAUCuGAAc -5'
28328 3' -51.9 NC_005905.1 + 17200 0.68 0.862849
Target:  5'- aGGUUGGCUUggGCCaagCUAG-CUUc -3'
miRNA:   3'- -CCAACCGAGuuCGGccaGAUCuGAAc -5'
28328 3' -51.9 NC_005905.1 + 17530 0.68 0.862849
Target:  5'- aGGUUGGCUUggGCCaagCUAG-CUUc -3'
miRNA:   3'- -CCAACCGAGuuCGGccaGAUCuGAAc -5'
28328 3' -51.9 NC_005905.1 + 17667 0.69 0.819449
Target:  5'- -cUUGGUcCAAGCCGGcCUGGAUUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 22189 0.7 0.794882
Target:  5'- uGUUgGGC-CAAGCCGGUUUaaauacgacaaauccAGGCUUGu -3'
miRNA:   3'- cCAA-CCGaGUUCGGCCAGA---------------UCUGAAC- -5'
28328 3' -51.9 NC_005905.1 + 19475 0.71 0.729961
Target:  5'- -cUUGGCcCAAGCCGGcUUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 21636 0.72 0.68718
Target:  5'- ---cGGCUCAAGCCGGcCUAuACUc- -3'
miRNA:   3'- ccaaCCGAGUUCGGCCaGAUcUGAac -5'
28328 3' -51.9 NC_005905.1 + 17144 0.72 0.665431
Target:  5'- ---cGGCcCAAGCCGGgCUGGACUc- -3'
miRNA:   3'- ccaaCCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 19410 0.74 0.577996
Target:  5'- -cUUGGUcCAAGCCGGcCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 17537 0.74 0.577996
Target:  5'- -cUUGGUcCAAGCCGGcCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 21958 0.75 0.513993
Target:  5'- -cUUGGCUCAAGCCGGcCUAaACUc- -3'
miRNA:   3'- ccAACCGAGUUCGGCCaGAUcUGAac -5'
28328 3' -51.9 NC_005905.1 + 8789 0.75 0.493282
Target:  5'- -cUUGGCcCAAGCCGGgCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 8724 0.76 0.472962
Target:  5'- -cUUGGCcCAAGCCGGcCUGGACa-- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGaac -5'
28328 3' -51.9 NC_005905.1 + 17602 0.77 0.414713
Target:  5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 19785 0.77 0.414713
Target:  5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 20024 0.77 0.414713
Target:  5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 19675 0.77 0.414713
Target:  5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5'
28328 3' -51.9 NC_005905.1 + 19850 0.77 0.414713
Target:  5'- -cUUGGCcCAAGCCGGcCUGGACUc- -3'
miRNA:   3'- ccAACCGaGUUCGGCCaGAUCUGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.