Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28334 | 3' | -62.9 | NC_005946.1 | + | 11280 | 0.66 | 0.56518 |
Target: 5'- cCCGGCuCccgucaggaugucuaGGGACuccucgaagGCCGCCCUgcucaGGGgUCCg -3' miRNA: 3'- -GGCUG-G---------------UCCUG---------CGGCGGGA-----CCCgAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 48491 | 0.66 | 0.561291 |
Target: 5'- cCUGAcCCAGGAC-CC-UCCUgaggaagaugaGGGCUCCc -3' miRNA: 3'- -GGCU-GGUCCUGcGGcGGGA-----------CCCGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 97573 | 0.66 | 0.555473 |
Target: 5'- cCCGACCuGGGAacgccgaccgaaaacUGCUGCCCgaaagccGGGUUaCCc -3' miRNA: 3'- -GGCUGG-UCCU---------------GCGGCGGGa------CCCGA-GG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 24946 | 0.66 | 0.551604 |
Target: 5'- cCCGugCuagcGGGAgCGaucaUGCUCaGGGCUCCg -3' miRNA: 3'- -GGCugG----UCCU-GCg---GCGGGaCCCGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 50040 | 0.66 | 0.551604 |
Target: 5'- --cACCGGGACaguaGCCGCUCUuggccaagugaGGGCUgCg -3' miRNA: 3'- ggcUGGUCCUG----CGGCGGGA-----------CCCGAgG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 78589 | 0.66 | 0.551604 |
Target: 5'- aCCGACCccGAgGCCGUCuUUGaGGCcauUCCg -3' miRNA: 3'- -GGCUGGucCUgCGGCGG-GAC-CCG---AGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 31479 | 0.66 | 0.541967 |
Target: 5'- aCCGuCCAGGACGguguacCUGCCCaUGGccaGCUUg -3' miRNA: 3'- -GGCuGGUCCUGC------GGCGGG-ACC---CGAGg -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 63194 | 0.66 | 0.541967 |
Target: 5'- gCGucCCGGGGCcauGCUGCCCagGGGUUUg -3' miRNA: 3'- gGCu-GGUCCUG---CGGCGGGa-CCCGAGg -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 20909 | 0.66 | 0.536212 |
Target: 5'- -aGGcCCAGGAgGCCcugucggccucagacGCCCUGGaGCaggCCg -3' miRNA: 3'- ggCU-GGUCCUgCGG---------------CGGGACC-CGa--GG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 97885 | 0.66 | 0.532388 |
Target: 5'- uUGGCCGGGAgGa--CCCUGG-CUCCg -3' miRNA: 3'- gGCUGGUCCUgCggcGGGACCcGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 60145 | 0.66 | 0.532388 |
Target: 5'- gCCGGUCAGGGCuGCCGUgguggUGGGgUCCa -3' miRNA: 3'- -GGCUGGUCCUG-CGGCGgg---ACCCgAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 98491 | 0.66 | 0.521921 |
Target: 5'- gCUGACUgggauggAGGugGCauaGUaCCaGGGCUCCa -3' miRNA: 3'- -GGCUGG-------UCCugCGg--CG-GGaCCCGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 90460 | 0.66 | 0.513417 |
Target: 5'- aCGACCAacccucucucuGGGCGCagGCUUUGGGCa-- -3' miRNA: 3'- gGCUGGU-----------CCUGCGg-CGGGACCCGagg -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 35956 | 0.67 | 0.504036 |
Target: 5'- cCCGcggcccuuGCCAcGGcCGCCGCCa-GGGC-CCu -3' miRNA: 3'- -GGC--------UGGU-CCuGCGGCGGgaCCCGaGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 94138 | 0.67 | 0.503102 |
Target: 5'- cCUGACCgccaagAGGACGCCugaacugGCUCUGucCUCCa -3' miRNA: 3'- -GGCUGG------UCCUGCGG-------CGGGACccGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 73436 | 0.67 | 0.494729 |
Target: 5'- uCgGGCCucuguggaagAGGAcCGCaaCGCCaaGGGCUCCa -3' miRNA: 3'- -GgCUGG----------UCCU-GCG--GCGGgaCCCGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 8088 | 0.67 | 0.493803 |
Target: 5'- gUGGCCAGGAUGagcucgggaggcaUCGUCUcGGGCUCa -3' miRNA: 3'- gGCUGGUCCUGC-------------GGCGGGaCCCGAGg -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 12621 | 0.67 | 0.484584 |
Target: 5'- aCGACCugaGGGACaGCCuGCCCcaggaggUGGaggaGCUCCu -3' miRNA: 3'- gGCUGG---UCCUG-CGG-CGGG-------ACC----CGAGG- -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 68600 | 0.67 | 0.476358 |
Target: 5'- aCGACguGGGCGCCuauguaGUCUUcgucGGGCUCg -3' miRNA: 3'- gGCUGguCCUGCGG------CGGGA----CCCGAGg -5' |
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28334 | 3' | -62.9 | NC_005946.1 | + | 102300 | 0.67 | 0.4673 |
Target: 5'- gCCGugCAGGGCcCCGCacgCCaGGGCgUCa -3' miRNA: 3'- -GGCugGUCCUGcGGCG---GGaCCCG-AGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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