miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28334 3' -62.9 NC_005946.1 + 11280 0.66 0.56518
Target:  5'- cCCGGCuCccgucaggaugucuaGGGACuccucgaagGCCGCCCUgcucaGGGgUCCg -3'
miRNA:   3'- -GGCUG-G---------------UCCUG---------CGGCGGGA-----CCCgAGG- -5'
28334 3' -62.9 NC_005946.1 + 48491 0.66 0.561291
Target:  5'- cCUGAcCCAGGAC-CC-UCCUgaggaagaugaGGGCUCCc -3'
miRNA:   3'- -GGCU-GGUCCUGcGGcGGGA-----------CCCGAGG- -5'
28334 3' -62.9 NC_005946.1 + 97573 0.66 0.555473
Target:  5'- cCCGACCuGGGAacgccgaccgaaaacUGCUGCCCgaaagccGGGUUaCCc -3'
miRNA:   3'- -GGCUGG-UCCU---------------GCGGCGGGa------CCCGA-GG- -5'
28334 3' -62.9 NC_005946.1 + 24946 0.66 0.551604
Target:  5'- cCCGugCuagcGGGAgCGaucaUGCUCaGGGCUCCg -3'
miRNA:   3'- -GGCugG----UCCU-GCg---GCGGGaCCCGAGG- -5'
28334 3' -62.9 NC_005946.1 + 50040 0.66 0.551604
Target:  5'- --cACCGGGACaguaGCCGCUCUuggccaagugaGGGCUgCg -3'
miRNA:   3'- ggcUGGUCCUG----CGGCGGGA-----------CCCGAgG- -5'
28334 3' -62.9 NC_005946.1 + 78589 0.66 0.551604
Target:  5'- aCCGACCccGAgGCCGUCuUUGaGGCcauUCCg -3'
miRNA:   3'- -GGCUGGucCUgCGGCGG-GAC-CCG---AGG- -5'
28334 3' -62.9 NC_005946.1 + 31479 0.66 0.541967
Target:  5'- aCCGuCCAGGACGguguacCUGCCCaUGGccaGCUUg -3'
miRNA:   3'- -GGCuGGUCCUGC------GGCGGG-ACC---CGAGg -5'
28334 3' -62.9 NC_005946.1 + 63194 0.66 0.541967
Target:  5'- gCGucCCGGGGCcauGCUGCCCagGGGUUUg -3'
miRNA:   3'- gGCu-GGUCCUG---CGGCGGGa-CCCGAGg -5'
28334 3' -62.9 NC_005946.1 + 20909 0.66 0.536212
Target:  5'- -aGGcCCAGGAgGCCcugucggccucagacGCCCUGGaGCaggCCg -3'
miRNA:   3'- ggCU-GGUCCUgCGG---------------CGGGACC-CGa--GG- -5'
28334 3' -62.9 NC_005946.1 + 60145 0.66 0.532388
Target:  5'- gCCGGUCAGGGCuGCCGUgguggUGGGgUCCa -3'
miRNA:   3'- -GGCUGGUCCUG-CGGCGgg---ACCCgAGG- -5'
28334 3' -62.9 NC_005946.1 + 97885 0.66 0.532388
Target:  5'- uUGGCCGGGAgGa--CCCUGG-CUCCg -3'
miRNA:   3'- gGCUGGUCCUgCggcGGGACCcGAGG- -5'
28334 3' -62.9 NC_005946.1 + 98491 0.66 0.521921
Target:  5'- gCUGACUgggauggAGGugGCauaGUaCCaGGGCUCCa -3'
miRNA:   3'- -GGCUGG-------UCCugCGg--CG-GGaCCCGAGG- -5'
28334 3' -62.9 NC_005946.1 + 90460 0.66 0.513417
Target:  5'- aCGACCAacccucucucuGGGCGCagGCUUUGGGCa-- -3'
miRNA:   3'- gGCUGGU-----------CCUGCGg-CGGGACCCGagg -5'
28334 3' -62.9 NC_005946.1 + 35956 0.67 0.504036
Target:  5'- cCCGcggcccuuGCCAcGGcCGCCGCCa-GGGC-CCu -3'
miRNA:   3'- -GGC--------UGGU-CCuGCGGCGGgaCCCGaGG- -5'
28334 3' -62.9 NC_005946.1 + 94138 0.67 0.503102
Target:  5'- cCUGACCgccaagAGGACGCCugaacugGCUCUGucCUCCa -3'
miRNA:   3'- -GGCUGG------UCCUGCGG-------CGGGACccGAGG- -5'
28334 3' -62.9 NC_005946.1 + 73436 0.67 0.494729
Target:  5'- uCgGGCCucuguggaagAGGAcCGCaaCGCCaaGGGCUCCa -3'
miRNA:   3'- -GgCUGG----------UCCU-GCG--GCGGgaCCCGAGG- -5'
28334 3' -62.9 NC_005946.1 + 8088 0.67 0.493803
Target:  5'- gUGGCCAGGAUGagcucgggaggcaUCGUCUcGGGCUCa -3'
miRNA:   3'- gGCUGGUCCUGC-------------GGCGGGaCCCGAGg -5'
28334 3' -62.9 NC_005946.1 + 12621 0.67 0.484584
Target:  5'- aCGACCugaGGGACaGCCuGCCCcaggaggUGGaggaGCUCCu -3'
miRNA:   3'- gGCUGG---UCCUG-CGG-CGGG-------ACC----CGAGG- -5'
28334 3' -62.9 NC_005946.1 + 68600 0.67 0.476358
Target:  5'- aCGACguGGGCGCCuauguaGUCUUcgucGGGCUCg -3'
miRNA:   3'- gGCUGguCCUGCGG------CGGGA----CCCGAGg -5'
28334 3' -62.9 NC_005946.1 + 102300 0.67 0.4673
Target:  5'- gCCGugCAGGGCcCCGCacgCCaGGGCgUCa -3'
miRNA:   3'- -GGCugGUCCUGcGGCG---GGaCCCG-AGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.