miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28341 5' -55.7 NC_005946.1 + 58188 0.66 0.8935
Target:  5'- -gAGGACCCccuacaacacUGUCCACGaUCAc-GUCUa -3'
miRNA:   3'- ggUCCUGGG----------ACAGGUGC-AGUcuCAGG- -5'
28341 5' -55.7 NC_005946.1 + 40331 0.66 0.8935
Target:  5'- gCCGGGACCUUGUgguacaggaCCugauCGUCcuuGUCCc -3'
miRNA:   3'- -GGUCCUGGGACA---------GGu---GCAGucuCAGG- -5'
28341 5' -55.7 NC_005946.1 + 28545 0.66 0.8935
Target:  5'- -gGGGAcgacccucaCCCUGUuccauguggCCugGUCGGcGUCCu -3'
miRNA:   3'- ggUCCU---------GGGACA---------GGugCAGUCuCAGG- -5'
28341 5' -55.7 NC_005946.1 + 39954 0.66 0.886679
Target:  5'- -uGGGGCUCugcgaUGUCC-CGUUGGGGUUCu -3'
miRNA:   3'- ggUCCUGGG-----ACAGGuGCAGUCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 67887 0.66 0.87963
Target:  5'- gCCAGGACC---UCCGCcUCGGGGUa- -3'
miRNA:   3'- -GGUCCUGGgacAGGUGcAGUCUCAgg -5'
28341 5' -55.7 NC_005946.1 + 17227 0.66 0.87963
Target:  5'- gCCAGGGggCUGUaCCACGUCauacuGGAGaaggCCa -3'
miRNA:   3'- -GGUCCUggGACA-GGUGCAG-----UCUCa---GG- -5'
28341 5' -55.7 NC_005946.1 + 42150 0.66 0.87963
Target:  5'- aCgGGGACCgUcugcgcGUCCAUGUCGGc-UCCa -3'
miRNA:   3'- -GgUCCUGGgA------CAGGUGCAGUCucAGG- -5'
28341 5' -55.7 NC_005946.1 + 52090 0.66 0.86486
Target:  5'- -gGGGAgaCUGUCuCACGuUCAGAGUUUu -3'
miRNA:   3'- ggUCCUggGACAG-GUGC-AGUCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 56417 0.66 0.86486
Target:  5'- uCCAGGAgCCUuugGUCCGgaggcaccaggcCGUCugugacggccGAGUCCa -3'
miRNA:   3'- -GGUCCUgGGA---CAGGU------------GCAGu---------CUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 94878 0.66 0.86486
Target:  5'- cCCAGGACCCcuaUGgucaagCCACcauUCAGGaUCCc -3'
miRNA:   3'- -GGUCCUGGG---ACa-----GGUGc--AGUCUcAGG- -5'
28341 5' -55.7 NC_005946.1 + 42194 0.66 0.854798
Target:  5'- gUCuGGACCCUGgggCCAC-UCGGGccacucgggcccacGUCCc -3'
miRNA:   3'- -GGuCCUGGGACa--GGUGcAGUCU--------------CAGG- -5'
28341 5' -55.7 NC_005946.1 + 64370 0.67 0.844389
Target:  5'- -uGGGGCCCgugGUCCcacccuuuaggaaagACGUCGcaaAGUCCu -3'
miRNA:   3'- ggUCCUGGGa--CAGG---------------UGCAGUc--UCAGG- -5'
28341 5' -55.7 NC_005946.1 + 63542 0.67 0.841118
Target:  5'- gCAGGACCCcaggGUgaggguucUCACGUCGGccgcauAGUCUg -3'
miRNA:   3'- gGUCCUGGGa---CA--------GGUGCAGUC------UCAGG- -5'
28341 5' -55.7 NC_005946.1 + 26973 0.67 0.841118
Target:  5'- gCCuguGGGCCUUGgUgGCGUCAGuGuUCCa -3'
miRNA:   3'- -GGu--CCUGGGACaGgUGCAGUCuC-AGG- -5'
28341 5' -55.7 NC_005946.1 + 16382 0.67 0.832807
Target:  5'- gCAGGGgCCagGUCUuuggaguggcguGCGUCAGAGgaaCCg -3'
miRNA:   3'- gGUCCUgGGa-CAGG------------UGCAGUCUCa--GG- -5'
28341 5' -55.7 NC_005946.1 + 69621 0.67 0.832807
Target:  5'- cCCAGGGguCCCUGUCCucca-GGAGggCCu -3'
miRNA:   3'- -GGUCCU--GGGACAGGugcagUCUCa-GG- -5'
28341 5' -55.7 NC_005946.1 + 76724 0.67 0.819126
Target:  5'- -aGGGGCCCcGcgggcgcaggcggagUCCACGUCcaccugguGGGUCCa -3'
miRNA:   3'- ggUCCUGGGaC---------------AGGUGCAGu-------CUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 23062 0.67 0.812116
Target:  5'- -gAGGACCCggaggucccggagGUCCGCGagacccCAGAGggCCg -3'
miRNA:   3'- ggUCCUGGGa------------CAGGUGCa-----GUCUCa-GG- -5'
28341 5' -55.7 NC_005946.1 + 13009 0.68 0.797781
Target:  5'- uCCAGGAaCCUGUaCC-CuUCAGAGUUUg -3'
miRNA:   3'- -GGUCCUgGGACA-GGuGcAGUCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 82903 0.68 0.792303
Target:  5'- uUCAGGGCCCcGgagccagucgCCACGggacacucgcugucCAGGGUCCc -3'
miRNA:   3'- -GGUCCUGGGaCa---------GGUGCa-------------GUCUCAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.