Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28356 | 3' | -57 | NC_005946.1 | + | 93991 | 0.66 | 0.831505 |
Target: 5'- cGCCCCGgc--CGUccuGACUgaCCUCCUg -3' miRNA: 3'- -CGGGGCaguuGCGu--CUGAgaGGAGGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 100961 | 0.66 | 0.823009 |
Target: 5'- gGCaCCCGUCG----AGACUCUUgUCCUg -3' miRNA: 3'- -CG-GGGCAGUugcgUCUGAGAGgAGGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 34135 | 0.66 | 0.814338 |
Target: 5'- -aCCUGUCGACggGCAuGACgUCcgUCCUCCUg -3' miRNA: 3'- cgGGGCAGUUG--CGU-CUG-AG--AGGAGGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 15018 | 0.66 | 0.805499 |
Target: 5'- cCCCCGUCA----AGACUCcUCCgaCCCa -3' miRNA: 3'- cGGGGCAGUugcgUCUGAG-AGGa-GGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 18787 | 0.66 | 0.805499 |
Target: 5'- aCCCCGUCuuuGCuCAGACcCUCUUCg- -3' miRNA: 3'- cGGGGCAGu--UGcGUCUGaGAGGAGgg -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 99353 | 0.66 | 0.805499 |
Target: 5'- uGCUCggUGUCugaGCAGACgaugcgCUCCUCCg -3' miRNA: 3'- -CGGG--GCAGuugCGUCUGa-----GAGGAGGg -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 72670 | 0.67 | 0.784579 |
Target: 5'- aCCCCGUgGgguucgugagggagGC-CAGGCUCUgUCUCCCc -3' miRNA: 3'- cGGGGCAgU--------------UGcGUCUGAGA-GGAGGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 86124 | 0.67 | 0.778062 |
Target: 5'- uCCCUGUCGAgGgcuucCAGcUUCUCCUCCa -3' miRNA: 3'- cGGGGCAGUUgC-----GUCuGAGAGGAGGg -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 9817 | 0.67 | 0.768639 |
Target: 5'- cCCCCGUCuaucuccuuGCcCGGcCUCgacCCUCCCa -3' miRNA: 3'- cGGGGCAGu--------UGcGUCuGAGa--GGAGGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 74457 | 0.67 | 0.759093 |
Target: 5'- aCCCCGUCGucauCGGGCUCcucguaUCCUgCCCu -3' miRNA: 3'- cGGGGCAGUugc-GUCUGAG------AGGA-GGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 60117 | 0.67 | 0.739669 |
Target: 5'- uCCaCCGUCccccaGUAGuCUgUCCUCCCg -3' miRNA: 3'- cGG-GGCAGuug--CGUCuGAgAGGAGGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 76721 | 0.68 | 0.72981 |
Target: 5'- gGCCCCGcgGGCGCAGGCggagUCCacgUCCa -3' miRNA: 3'- -CGGGGCagUUGCGUCUGag--AGGa--GGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 49553 | 0.68 | 0.728819 |
Target: 5'- cCCCCGUUugcCGCaaagcuccugacGGACUCUugggugcacgaucCCUCCCu -3' miRNA: 3'- cGGGGCAGuu-GCG------------UCUGAGA-------------GGAGGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 47686 | 0.68 | 0.719865 |
Target: 5'- aUCCCGUCcagccuGACGCuGACaacCCUCCCc -3' miRNA: 3'- cGGGGCAG------UUGCGuCUGagaGGAGGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 94539 | 0.68 | 0.713861 |
Target: 5'- aGCUuuGgagCGACgGCGGugUCaucgucuccuuccccUCCUCCCa -3' miRNA: 3'- -CGGggCa--GUUG-CGUCugAG---------------AGGAGGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 20960 | 0.68 | 0.709844 |
Target: 5'- aGUCauaCGUgGugGCGGAC-CUggCCUCCCa -3' miRNA: 3'- -CGGg--GCAgUugCGUCUGaGA--GGAGGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 38339 | 0.68 | 0.709844 |
Target: 5'- cCCCCGUCAuguUGUGGAUUCcuaUCCCg -3' miRNA: 3'- cGGGGCAGUu--GCGUCUGAGaggAGGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 63610 | 0.68 | 0.709844 |
Target: 5'- aCCUCGUa---GCAGAgcaucCUCUCCUCCa -3' miRNA: 3'- cGGGGCAguugCGUCU-----GAGAGGAGGg -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 64993 | 0.68 | 0.709844 |
Target: 5'- gGCgUCGUCAGCcuCAGcCUCUCUaUCCCg -3' miRNA: 3'- -CGgGGCAGUUGc-GUCuGAGAGG-AGGG- -5' |
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28356 | 3' | -57 | NC_005946.1 | + | 83191 | 0.68 | 0.68961 |
Target: 5'- gGCCCCG-CAcAgGCAGucCUCUUCgCCCa -3' miRNA: 3'- -CGGGGCaGU-UgCGUCu-GAGAGGaGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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