Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28363 | 3' | -57.3 | NC_005946.1 | + | 59759 | 0.66 | 0.826054 |
Target: 5'- gGuGGACUugAGcUUGGCCACaGCGGCUg -3' miRNA: 3'- gCuCCUGG--UCaGACUGGUGcCGCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 78978 | 0.66 | 0.825206 |
Target: 5'- -cAGGGCCGGg--GGCCACagggcuuGGCGuACCu -3' miRNA: 3'- gcUCCUGGUCagaCUGGUG-------CCGC-UGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 89760 | 0.66 | 0.814891 |
Target: 5'- aGAGGGUCAGgacCUGgggagugucgggcaGCCAccCGGCGGCCc -3' miRNA: 3'- gCUCCUGGUCa--GAC--------------UGGU--GCCGCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 41498 | 0.66 | 0.808763 |
Target: 5'- --uGGACCuGUgccGCCACGGgGACCc -3' miRNA: 3'- gcuCCUGGuCAgacUGGUGCCgCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 73533 | 0.66 | 0.806997 |
Target: 5'- cCGAGGACCccguggcGGaUCUGGCCaagcacguccccgACGGCaGGuCCg -3' miRNA: 3'- -GCUCCUGG-------UC-AGACUGG-------------UGCCG-CU-GG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 79245 | 0.66 | 0.799872 |
Target: 5'- aGAGGACCc------UCGCGGCGGCCu -3' miRNA: 3'- gCUCCUGGucagacuGGUGCCGCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 49364 | 0.66 | 0.790829 |
Target: 5'- nCGAGGACCgGGUCgUGAgUCAggaGGCaGGCCu -3' miRNA: 3'- -GCUCCUGG-UCAG-ACU-GGUg--CCG-CUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 67553 | 0.66 | 0.790829 |
Target: 5'- gGAGGACCGG-CUgGGCCcugcACuGGUGGCa -3' miRNA: 3'- gCUCCUGGUCaGA-CUGG----UG-CCGCUGg -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 63294 | 0.67 | 0.781643 |
Target: 5'- aGuGGACCacccccacAGagUGAgCgGCGGCGGCCg -3' miRNA: 3'- gCuCCUGG--------UCagACU-GgUGCCGCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 69406 | 0.67 | 0.780717 |
Target: 5'- gGAGGAaagacugaagacaCCGccUUGGCCACGGCcACCg -3' miRNA: 3'- gCUCCU-------------GGUcaGACUGGUGCCGcUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 103861 | 0.67 | 0.772322 |
Target: 5'- cCGAGGACCuccgccaUCUca-CGCaGGCGACCg -3' miRNA: 3'- -GCUCCUGGuc-----AGAcugGUG-CCGCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 102995 | 0.67 | 0.772322 |
Target: 5'- gGAGGGCCGGga-GA-CACGGgGACg -3' miRNA: 3'- gCUCCUGGUCagaCUgGUGCCgCUGg -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 74222 | 0.67 | 0.772322 |
Target: 5'- uGuGGaACgAGUUcccGGCCAUGGUGGCCa -3' miRNA: 3'- gCuCC-UGgUCAGa--CUGGUGCCGCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 100911 | 0.67 | 0.772322 |
Target: 5'- aGAGGACagcguguccuCGGUCuUGGCCggucugACGGCuGCCa -3' miRNA: 3'- gCUCCUG----------GUCAG-ACUGG------UGCCGcUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 94253 | 0.67 | 0.762876 |
Target: 5'- cCGAGGugUAcUCUGACCccgacAUGGUcGCCg -3' miRNA: 3'- -GCUCCugGUcAGACUGG-----UGCCGcUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 1048 | 0.67 | 0.753314 |
Target: 5'- --uGGACC-GUCUGGCC-C-GUGACCg -3' miRNA: 3'- gcuCCUGGuCAGACUGGuGcCGCUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 75134 | 0.67 | 0.753314 |
Target: 5'- -cAGGGCCAGgccgGACCugGGa-GCCa -3' miRNA: 3'- gcUCCUGGUCaga-CUGGugCCgcUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 80380 | 0.67 | 0.753314 |
Target: 5'- aGAGGACCAGcCUGucccuGCCuuCGGacaggGGCCc -3' miRNA: 3'- gCUCCUGGUCaGAC-----UGGu-GCCg----CUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 22181 | 0.67 | 0.743644 |
Target: 5'- --cGGGCUGGcugccCUGGCCGCGGCcgcuccccuGACCg -3' miRNA: 3'- gcuCCUGGUCa----GACUGGUGCCG---------CUGG- -5' |
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28363 | 3' | -57.3 | NC_005946.1 | + | 42150 | 0.67 | 0.733877 |
Target: 5'- aCGGGGACC-GUCUGcgcguCCAUGuCGGCUc -3' miRNA: 3'- -GCUCCUGGuCAGACu----GGUGCcGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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