miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28372 3' -64.4 NC_005946.1 + 41964 0.66 0.472575
Target:  5'- cCCCGgguggaCCCGGGGGucccuuGUCGCCcuuuGGCCCUc -3'
miRNA:   3'- -GGGUa-----GGGUCCCUc-----CGGCGG----UCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 53250 0.66 0.463572
Target:  5'- uCCCAggcgUCCCgucgugaaacggAGGGuGGacgcagucaagcCCGCC-GCCCCa -3'
miRNA:   3'- -GGGU----AGGG------------UCCCuCC------------GGCGGuCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 48643 0.66 0.463572
Target:  5'- cCCCAUCgCagaAGGGuccaAGGCCaugGCC-GCCCUc -3'
miRNA:   3'- -GGGUAG-Gg--UCCC----UCCGG---CGGuCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 89201 0.66 0.463572
Target:  5'- aCCUuUCCC--GGAGGCCuGUaCAGCCUCu -3'
miRNA:   3'- -GGGuAGGGucCCUCCGG-CG-GUCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 102031 0.66 0.463572
Target:  5'- gCC-UCUCGGaGAcGGCUGCCAGCUCg -3'
miRNA:   3'- gGGuAGGGUCcCU-CCGGCGGUCGGGg -5'
28372 3' -64.4 NC_005946.1 + 86203 0.66 0.463572
Target:  5'- cUCCAUCCCGGGuAGaGCCGUCAcagguauuccuGCggagCCCg -3'
miRNA:   3'- -GGGUAGGGUCCcUC-CGGCGGU-----------CG----GGG- -5'
28372 3' -64.4 NC_005946.1 + 76645 0.66 0.462676
Target:  5'- gCCCAggggCCCAGGGgagcagaGGGaCCaGCCGGaCCa -3'
miRNA:   3'- -GGGUa---GGGUCCC-------UCC-GG-CGGUCgGGg -5'
28372 3' -64.4 NC_005946.1 + 11274 0.66 0.453773
Target:  5'- uCCCGUCaggauguCUAGGGAcuccucgaaGGCCGCCcuGCUCa -3'
miRNA:   3'- -GGGUAG-------GGUCCCU---------CCGGCGGu-CGGGg -5'
28372 3' -64.4 NC_005946.1 + 72547 0.66 0.452003
Target:  5'- aCCCAgaggggaUCAGGGGGuCCGgauacgacagucccCCGGCCCCc -3'
miRNA:   3'- -GGGUag-----GGUCCCUCcGGC--------------GGUCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 34370 0.66 0.44584
Target:  5'- gCCCAcggUUCGGGGAGa-CGCCuGCCCUu -3'
miRNA:   3'- -GGGUa--GGGUCCCUCcgGCGGuCGGGG- -5'
28372 3' -64.4 NC_005946.1 + 64738 0.66 0.437117
Target:  5'- cUCCAuuuUCUCAGcGcGGGcCCGUCAGCCCa -3'
miRNA:   3'- -GGGU---AGGGUC-CcUCC-GGCGGUCGGGg -5'
28372 3' -64.4 NC_005946.1 + 3282 0.66 0.428493
Target:  5'- gCCAUCggCAGuGAGGCUGgCGGCuCCCg -3'
miRNA:   3'- gGGUAGg-GUCcCUCCGGCgGUCG-GGG- -5'
28372 3' -64.4 NC_005946.1 + 61125 0.67 0.41997
Target:  5'- uUCCAagaaCAGGGAGGCCGUUuacaucGCCgCCg -3'
miRNA:   3'- -GGGUagg-GUCCCUCCGGCGGu-----CGG-GG- -5'
28372 3' -64.4 NC_005946.1 + 70224 0.67 0.41997
Target:  5'- aCCAUCUCGGGGcAGGCCcUCAGagucuuuaugucCUCCa -3'
miRNA:   3'- gGGUAGGGUCCC-UCCGGcGGUC------------GGGG- -5'
28372 3' -64.4 NC_005946.1 + 75037 0.67 0.411551
Target:  5'- aCCAcgaCCGGGuGAgcGGCCGCCAGgucguaaCCCg -3'
miRNA:   3'- gGGUag-GGUCC-CU--CCGGCGGUCg------GGG- -5'
28372 3' -64.4 NC_005946.1 + 21825 0.67 0.411551
Target:  5'- gCCG--CCAGGGuGGCCGUCAaugGCgCCa -3'
miRNA:   3'- gGGUagGGUCCCuCCGGCGGU---CGgGG- -5'
28372 3' -64.4 NC_005946.1 + 15919 0.67 0.403237
Target:  5'- gCgGUCguggCCAuGGAGGCCGCCGaUCCCa -3'
miRNA:   3'- gGgUAG----GGUcCCUCCGGCGGUcGGGG- -5'
28372 3' -64.4 NC_005946.1 + 95381 0.67 0.403237
Target:  5'- aCCGUC--AGGGGGaCCGUCAGgCCCa -3'
miRNA:   3'- gGGUAGggUCCCUCcGGCGGUCgGGG- -5'
28372 3' -64.4 NC_005946.1 + 76366 0.67 0.39503
Target:  5'- aCCgGUCCCAGcGGGG-CGCCuggaucucagGGCCCg -3'
miRNA:   3'- -GGgUAGGGUCcCUCCgGCGG----------UCGGGg -5'
28372 3' -64.4 NC_005946.1 + 56310 0.67 0.386933
Target:  5'- gUCCAUCCUGgagacaagguGGGAGacgucggccucuGCCGCCGGgUCCa -3'
miRNA:   3'- -GGGUAGGGU----------CCCUC------------CGGCGGUCgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.