miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28449 3' -63.1 NC_005946.1 + 10293 0.66 0.531032
Target:  5'- ----aCCGGauCGGGAgCGCCGGGGCa- -3'
miRNA:   3'- ugacaGGCC--GUCCUgGCGGCCCUGgg -5'
28449 3' -63.1 NC_005946.1 + 75827 0.66 0.519583
Target:  5'- -aUGgcgUCGGCgAGGACCacguccuGCCGGGcuauggcGCCCg -3'
miRNA:   3'- ugACa--GGCCG-UCCUGG-------CGGCCC-------UGGG- -5'
28449 3' -63.1 NC_005946.1 + 40222 0.66 0.502596
Target:  5'- gACUGgguuuggaaGGCAGGACCaUCuGGGCCCu -3'
miRNA:   3'- -UGACagg------CCGUCCUGGcGGcCCUGGG- -5'
28449 3' -63.1 NC_005946.1 + 41435 0.66 0.493265
Target:  5'- cACggGUCCGuG-AGGuCCGCgGGGuCCCg -3'
miRNA:   3'- -UGa-CAGGC-CgUCCuGGCGgCCCuGGG- -5'
28449 3' -63.1 NC_005946.1 + 8934 0.67 0.473934
Target:  5'- uCUGUgCaGGguGGGCUGCCuguugagggccacGGGAUCCc -3'
miRNA:   3'- uGACAgG-CCguCCUGGCGG-------------CCCUGGG- -5'
28449 3' -63.1 NC_005946.1 + 101503 0.67 0.469388
Target:  5'- aACUGUUUggacgugagaagaagGGCaAGGACCGUccccgggaagaCGGGACUCa -3'
miRNA:   3'- -UGACAGG---------------CCG-UCCUGGCG-----------GCCCUGGG- -5'
28449 3' -63.1 NC_005946.1 + 60493 0.67 0.447883
Target:  5'- cCUGUgggCCGGaaaaccGGuccccACCGCCGGaGACCCg -3'
miRNA:   3'- uGACA---GGCCgu----CC-----UGGCGGCC-CUGGG- -5'
28449 3' -63.1 NC_005946.1 + 10422 0.67 0.429522
Target:  5'- ----cCCGGacaCAGGACCGCCGccgcguaGGACCUc -3'
miRNA:   3'- ugacaGGCC---GUCCUGGCGGC-------CCUGGG- -5'
28449 3' -63.1 NC_005946.1 + 99551 0.69 0.372464
Target:  5'- -aUGUCCaGagcgucaauCAGGACCacGCCGGcGACCCu -3'
miRNA:   3'- ugACAGGcC---------GUCCUGG--CGGCC-CUGGG- -5'
28449 3' -63.1 NC_005946.1 + 731 0.69 0.364633
Target:  5'- --gGUCCGaCAGGACCuuGCCGgGGAUCUu -3'
miRNA:   3'- ugaCAGGCcGUCCUGG--CGGC-CCUGGG- -5'
28449 3' -63.1 NC_005946.1 + 100945 0.69 0.349316
Target:  5'- cUUGUCCuGaCAGaGCCGCCGGcagaGACCCa -3'
miRNA:   3'- uGACAGGcC-GUCcUGGCGGCC----CUGGG- -5'
28449 3' -63.1 NC_005946.1 + 43692 0.7 0.327211
Target:  5'- cGCUGUacuuuUCGGcCAGGGucCCGUagaGGGACCCc -3'
miRNA:   3'- -UGACA-----GGCC-GUCCU--GGCGg--CCCUGGG- -5'
28449 3' -63.1 NC_005946.1 + 67565 0.7 0.320077
Target:  5'- gGCUGgugagCUGG-AGGACCgGCUGGG-CCCu -3'
miRNA:   3'- -UGACa----GGCCgUCCUGG-CGGCCCuGGG- -5'
28449 3' -63.1 NC_005946.1 + 51787 0.7 0.317959
Target:  5'- aACUGUgCgaGGUugcguuucucaucgAGGACCGUCGGaGGCCCu -3'
miRNA:   3'- -UGACAgG--CCG--------------UCCUGGCGGCC-CUGGG- -5'
28449 3' -63.1 NC_005946.1 + 40133 0.7 0.310977
Target:  5'- gGCUcUCCGGCgggcauaaacagagGGGGCCuGaCgGGGACCCu -3'
miRNA:   3'- -UGAcAGGCCG--------------UCCUGG-C-GgCCCUGGG- -5'
28449 3' -63.1 NC_005946.1 + 61189 0.7 0.30616
Target:  5'- gGCUGagggccaaCGGgGGGACCGuCCuGGACCCc -3'
miRNA:   3'- -UGACag------GCCgUCCUGGC-GGcCCUGGG- -5'
28449 3' -63.1 NC_005946.1 + 2881 0.7 0.299377
Target:  5'- cCUGUCCucGCAGGA-CGCCGGcugggccacuaGGCCCg -3'
miRNA:   3'- uGACAGGc-CGUCCUgGCGGCC-----------CUGGG- -5'
28449 3' -63.1 NC_005946.1 + 41622 0.7 0.292711
Target:  5'- cCUGUccccuccuaCCGaCGGGGCCGgCGGGACCa -3'
miRNA:   3'- uGACA---------GGCcGUCCUGGCgGCCCUGGg -5'
28449 3' -63.1 NC_005946.1 + 76928 0.7 0.286161
Target:  5'- ---aUCCGGaucccaagAGGACCGuCCGGGgACCCa -3'
miRNA:   3'- ugacAGGCCg-------UCCUGGC-GGCCC-UGGG- -5'
28449 3' -63.1 NC_005946.1 + 49405 0.71 0.27341
Target:  5'- --cGUagaCGGgAGGACCGCCGucGGACCa -3'
miRNA:   3'- ugaCAg--GCCgUCCUGGCGGC--CCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.