miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28510 3' -58.8 NC_005946.1 + 11185 0.66 0.761817
Target:  5'- gUCCUCCCagaggguUCcACGGGGGCCCucagaggaggauuggCGUCg -3'
miRNA:   3'- -AGGAGGGc------AGaUGCUCCUGGG---------------GCAGg -5'
28510 3' -58.8 NC_005946.1 + 61267 0.66 0.748568
Target:  5'- gCCUCCUcagaGUCgaaGGGGAUCCUGUgCu -3'
miRNA:   3'- aGGAGGG----CAGaugCUCCUGGGGCAgG- -5'
28510 3' -58.8 NC_005946.1 + 11465 0.66 0.729306
Target:  5'- aCCUCgCCGcCcugGUGAGGGCCCUGccuUCCg -3'
miRNA:   3'- aGGAG-GGCaGa--UGCUCCUGGGGC---AGG- -5'
28510 3' -58.8 NC_005946.1 + 78874 0.66 0.729306
Target:  5'- gCCUgUCGUCgGCGAGGuCCgCCGUg- -3'
miRNA:   3'- aGGAgGGCAGaUGCUCCuGG-GGCAgg -5'
28510 3' -58.8 NC_005946.1 + 64409 0.66 0.729306
Target:  5'- aCCUgugCCGcC-ACGGGGACCCgCGUCa -3'
miRNA:   3'- aGGAg--GGCaGaUGCUCCUGGG-GCAGg -5'
28510 3' -58.8 NC_005946.1 + 25505 0.67 0.719549
Target:  5'- cUCUUgCCGUCUcccgcaaaGAGGACcagCCUGUCCc -3'
miRNA:   3'- -AGGAgGGCAGAug------CUCCUG---GGGCAGG- -5'
28510 3' -58.8 NC_005946.1 + 76415 0.67 0.719549
Target:  5'- gUCCUCCUGcuagcuccUCUGCGAG-ACCC--UCCa -3'
miRNA:   3'- -AGGAGGGC--------AGAUGCUCcUGGGgcAGG- -5'
28510 3' -58.8 NC_005946.1 + 33172 0.68 0.659773
Target:  5'- ---gUCCGgcgCUGCGGGGuCCgCGUCCg -3'
miRNA:   3'- aggaGGGCa--GAUGCUCCuGGgGCAGG- -5'
28510 3' -58.8 NC_005946.1 + 83608 0.68 0.639585
Target:  5'- -aCUCCC-UCU-CGAGGGCCCUGa-- -3'
miRNA:   3'- agGAGGGcAGAuGCUCCUGGGGCagg -5'
28510 3' -58.8 NC_005946.1 + 34004 0.68 0.619374
Target:  5'- ---aCCCGUCgugcGCGGGGGCCCUugCCa -3'
miRNA:   3'- aggaGGGCAGa---UGCUCCUGGGGcaGG- -5'
28510 3' -58.8 NC_005946.1 + 91398 0.68 0.609279
Target:  5'- cCUUCCUGUC--CGAGGAcaCCCCGUa- -3'
miRNA:   3'- aGGAGGGCAGauGCUCCU--GGGGCAgg -5'
28510 3' -58.8 NC_005946.1 + 78104 0.69 0.5992
Target:  5'- gCCUCCCGUCccucAGGcACCCC-UCCc -3'
miRNA:   3'- aGGAGGGCAGaugcUCC-UGGGGcAGG- -5'
28510 3' -58.8 NC_005946.1 + 71792 0.69 0.5992
Target:  5'- gUCCUCCUGUUUACaGGGccguaGCCCUGaagcUCCc -3'
miRNA:   3'- -AGGAGGGCAGAUGcUCC-----UGGGGC----AGG- -5'
28510 3' -58.8 NC_005946.1 + 44189 0.69 0.579122
Target:  5'- gUCCUCuuGUCUGUGAGG-CCCUcUCa -3'
miRNA:   3'- -AGGAGggCAGAUGCUCCuGGGGcAGg -5'
28510 3' -58.8 NC_005946.1 + 96342 0.69 0.569134
Target:  5'- aUCCUCaCCGUCUcCucGGGCCUC-UCCg -3'
miRNA:   3'- -AGGAG-GGCAGAuGcuCCUGGGGcAGG- -5'
28510 3' -58.8 NC_005946.1 + 97761 0.69 0.55919
Target:  5'- aUCCcuuUCCC--CUGCccAGGACCCUGUCCa -3'
miRNA:   3'- -AGG---AGGGcaGAUGc-UCCUGGGGCAGG- -5'
28510 3' -58.8 NC_005946.1 + 99581 0.69 0.55919
Target:  5'- aUCCUCCUGuacUCUGCcuGGACCCaCGgCCc -3'
miRNA:   3'- -AGGAGGGC---AGAUGcuCCUGGG-GCaGG- -5'
28510 3' -58.8 NC_005946.1 + 32341 0.69 0.553247
Target:  5'- cCCUCCucauggagcagcacgCGUCcgccccCGAGGACCCCGUg- -3'
miRNA:   3'- aGGAGG---------------GCAGau----GCUCCUGGGGCAgg -5'
28510 3' -58.8 NC_005946.1 + 47990 0.7 0.491266
Target:  5'- aCCUCuuGgCUGCcAGGGCCCUGUUg -3'
miRNA:   3'- aGGAGggCaGAUGcUCCUGGGGCAGg -5'
28510 3' -58.8 NC_005946.1 + 30071 0.71 0.472547
Target:  5'- -aUUCCCauggcGUCgGCGAGGACCaCGUCCu -3'
miRNA:   3'- agGAGGG-----CAGaUGCUCCUGGgGCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.