Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28564 | 5' | -62.1 | NC_005946.1 | + | 72200 | 0.66 | 0.577192 |
|
Target: 5'- uACCCCcaaaagAGCCUGGUGGACUCUagguccguaaaGAGGCu -3' miRNA: 3'- -UGGGG------UCGGACUGCCUGGGG-----------CUCUGc -5' |
|||||||
| 28564 | 5' | -62.1 | NC_005946.1 | + | 74135 | 0.67 | 0.490307 |
|
Target: 5'- aGCCCCcguGCCcaGACGGcaaACCCUGGGAg- -3' miRNA: 3'- -UGGGGu--CGGa-CUGCC---UGGGGCUCUgc -5' |
|||||||
| 28564 | 5' | -62.1 | NC_005946.1 | + | 94806 | 0.7 | 0.361219 |
|
Target: 5'- aACCCCAGgCUGAauauaCCCGAGACu -3' miRNA: 3'- -UGGGGUCgGACUgccugGGGCUCUGc -5' |
|||||||
| 28564 | 5' | -62.1 | NC_005946.1 | + | 95362 | 0.67 | 0.518686 |
|
Target: 5'- gGCCCaggGGCUUcGGgGGAggcagguuccCCCCGAGGCGa -3' miRNA: 3'- -UGGGg--UCGGA-CUgCCU----------GGGGCUCUGC- -5' |
|||||||
| 28564 | 5' | -62.1 | NC_005946.1 | + | 100886 | 0.72 | 0.270008 |
|
Target: 5'- --gCCGGUCUGACGGcuGCCaUCGAGACGg -3' miRNA: 3'- uggGGUCGGACUGCC--UGG-GGCUCUGC- -5' |
|||||||
| 28564 | 5' | -62.1 | NC_005946.1 | + | 102049 | 0.67 | 0.50915 |
|
Target: 5'- gGCCCCuGGuCUUGACGaGCCUCucgGAGACGg -3' miRNA: 3'- -UGGGG-UC-GGACUGCcUGGGG---CUCUGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home