miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28724 3' -53.6 NC_006146.1 + 40438 0.66 0.969392
Target:  5'- gGCAGCgGCCccGUaGGCGggugCGGCAAUGg -3'
miRNA:   3'- -UGUCGaCGGucUA-CCGUa---GCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 116842 0.69 0.876841
Target:  5'- cGCGGCgGCCAGGUGGgcccugaccacCGcCGACAugGc -3'
miRNA:   3'- -UGUCGaCGGUCUACC-----------GUaGCUGUugC- -5'
28724 3' -53.6 NC_006146.1 + 15878 0.7 0.853937
Target:  5'- uACAGCgUGCCGGAgggcucgcUGGCcUCGAgcCAGCa -3'
miRNA:   3'- -UGUCG-ACGGUCU--------ACCGuAGCU--GUUGc -5'
28724 3' -53.6 NC_006146.1 + 21356 0.71 0.78428
Target:  5'- -gGGCUGCCGGcgGGCuuccugccggucAUCGACAuccucaACGa -3'
miRNA:   3'- ugUCGACGGUCuaCCG------------UAGCUGU------UGC- -5'
28724 3' -53.6 NC_006146.1 + 72196 0.72 0.725862
Target:  5'- cGCGGCgGCCGGAUgGGCGggaGAcCAGCGg -3'
miRNA:   3'- -UGUCGaCGGUCUA-CCGUag-CU-GUUGC- -5'
28724 3' -53.6 NC_006146.1 + 101853 0.74 0.653001
Target:  5'- -gGGCUGCCgcaccacGGGUGGCGgggCGAgGACGg -3'
miRNA:   3'- ugUCGACGG-------UCUACCGUa--GCUgUUGC- -5'
28724 3' -53.6 NC_006146.1 + 114382 0.74 0.63322
Target:  5'- uCAGCUGCU-GAUGGCcggCGACGACc -3'
miRNA:   3'- uGUCGACGGuCUACCGua-GCUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 27356 0.77 0.471432
Target:  5'- cGCGGCaagGCCGGggGGCGUCugGACAGCa -3'
miRNA:   3'- -UGUCGa--CGGUCuaCCGUAG--CUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 170157 1.09 0.004611
Target:  5'- gACAGCUGCCAGAUGGCAUCGACAACGa -3'
miRNA:   3'- -UGUCGACGGUCUACCGUAGCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 110275 0.69 0.88403
Target:  5'- uGCAGagccccguCUGCCAuGAUGGCcUCGGCGuagGCGu -3'
miRNA:   3'- -UGUC--------GACGGU-CUACCGuAGCUGU---UGC- -5'
28724 3' -53.6 NC_006146.1 + 109129 0.69 0.88403
Target:  5'- -aGGCUGCCGucuugGGCAUCaGCAGCa -3'
miRNA:   3'- ugUCGACGGUcua--CCGUAGcUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 104421 0.69 0.897711
Target:  5'- cCGGCUGCCgcauaccuacaAGGUGGaCAggGGCGGCGc -3'
miRNA:   3'- uGUCGACGG-----------UCUACC-GUagCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 8129 0.66 0.962915
Target:  5'- -aGGCcGCUAGGUGGCGgcauaGACAAUu -3'
miRNA:   3'- ugUCGaCGGUCUACCGUag---CUGUUGc -5'
28724 3' -53.6 NC_006146.1 + 49176 0.66 0.955539
Target:  5'- aGCAGUUcCCGGAUGGUA-CGGCGGg- -3'
miRNA:   3'- -UGUCGAcGGUCUACCGUaGCUGUUgc -5'
28724 3' -53.6 NC_006146.1 + 60478 0.67 0.947226
Target:  5'- aGCGGUgagagGCCGGggGGCcagcuccccCGACGGCGa -3'
miRNA:   3'- -UGUCGa----CGGUCuaCCGua-------GCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 112055 0.67 0.947226
Target:  5'- -gGGCUGCCGGccuugacGGCGcagUUGACGAUGg -3'
miRNA:   3'- ugUCGACGGUCua-----CCGU---AGCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 123700 0.67 0.93294
Target:  5'- -aGGCgGCCAGGggccUGGCGcucggggCGGCGGCGg -3'
miRNA:   3'- ugUCGaCGGUCU----ACCGUa------GCUGUUGC- -5'
28724 3' -53.6 NC_006146.1 + 165804 0.68 0.927685
Target:  5'- cACGGCcgGCUAGGggggcgucccUGGCcgCGugGACGc -3'
miRNA:   3'- -UGUCGa-CGGUCU----------ACCGuaGCugUUGC- -5'
28724 3' -53.6 NC_006146.1 + 84878 0.68 0.927685
Target:  5'- aGCGGCU-CCAG-UGGCAgCGACAcugGCa -3'
miRNA:   3'- -UGUCGAcGGUCuACCGUaGCUGU---UGc -5'
28724 3' -53.6 NC_006146.1 + 29760 0.68 0.904195
Target:  5'- cGCAGCUGCUGGAa-GCAUCgGGCAAa- -3'
miRNA:   3'- -UGUCGACGGUCUacCGUAG-CUGUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.