miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28724 5' -47.8 NC_006146.1 + 111093 0.66 0.999803
Target:  5'- aGACGACGCccuCAAUCAgCUggaGCucuGCCg -3'
miRNA:   3'- -UUGCUGCGuuuGUUAGUaGAa--CG---CGG- -5'
28724 5' -47.8 NC_006146.1 + 84188 0.66 0.999803
Target:  5'- uAGCGAUGCuuGCuc-CAUCgcGUGCCc -3'
miRNA:   3'- -UUGCUGCGuuUGuuaGUAGaaCGCGG- -5'
28724 5' -47.8 NC_006146.1 + 153348 0.66 0.999798
Target:  5'- uGGCGGCGCAGGgAGUCAuaggcaaauuggaUCUggaugGUgGCCg -3'
miRNA:   3'- -UUGCUGCGUUUgUUAGU-------------AGAa----CG-CGG- -5'
28724 5' -47.8 NC_006146.1 + 95321 0.66 0.999679
Target:  5'- --aGGCGCGGAgGGUCugggagagAUUUUGCGCg -3'
miRNA:   3'- uugCUGCGUUUgUUAG--------UAGAACGCGg -5'
28724 5' -47.8 NC_006146.1 + 116505 0.66 0.999672
Target:  5'- gAGCGGCGCGAGgAggcggcaccacccAUCGUCUgGC-CCa -3'
miRNA:   3'- -UUGCUGCGUUUgU-------------UAGUAGAaCGcGG- -5'
28724 5' -47.8 NC_006146.1 + 156844 0.66 0.999595
Target:  5'- gGAgGAcCGCAGcCAGcCGgcgCUUGCGCCu -3'
miRNA:   3'- -UUgCU-GCGUUuGUUaGUa--GAACGCGG- -5'
28724 5' -47.8 NC_006146.1 + 685 0.66 0.999492
Target:  5'- aGAUGGCGCaAGAUGAUUGUUU-GCGUCg -3'
miRNA:   3'- -UUGCUGCG-UUUGUUAGUAGAaCGCGG- -5'
28724 5' -47.8 NC_006146.1 + 54874 0.66 0.99948
Target:  5'- aAugGGCuGCGGGCGuagcgggGUCcgCUcGCGCCg -3'
miRNA:   3'- -UugCUG-CGUUUGU-------UAGuaGAaCGCGG- -5'
28724 5' -47.8 NC_006146.1 + 79075 0.67 0.999366
Target:  5'- --gGACGCAuGCGAUgacggcugcCAaCUUGCGCUg -3'
miRNA:   3'- uugCUGCGUuUGUUA---------GUaGAACGCGG- -5'
28724 5' -47.8 NC_006146.1 + 54837 0.67 0.999215
Target:  5'- gGACGuCGCc-ACAuUUGUCaUGCGCCa -3'
miRNA:   3'- -UUGCuGCGuuUGUuAGUAGaACGCGG- -5'
28724 5' -47.8 NC_006146.1 + 32061 0.67 0.999199
Target:  5'- gGGCGugGCGAGCAucgGUCAgCUgaccaaaUGUGCa -3'
miRNA:   3'- -UUGCugCGUUUGU---UAGUaGA-------ACGCGg -5'
28724 5' -47.8 NC_006146.1 + 135891 0.67 0.999199
Target:  5'- gGGCGugGCGAGCAucgGUCAgCUgaccaaaUGUGCa -3'
miRNA:   3'- -UUGCugCGUUUGU---UAGUaGA-------ACGCGg -5'
28724 5' -47.8 NC_006146.1 + 160458 0.67 0.999199
Target:  5'- aGGCGGCGCucuCGugGUCAUCcagguagUUGCGCa -3'
miRNA:   3'- -UUGCUGCGuuuGU--UAGUAG-------AACGCGg -5'
28724 5' -47.8 NC_006146.1 + 166890 0.67 0.998818
Target:  5'- gAGCGGgGCAAaggccGCGuUCAUCa-GCGCCu -3'
miRNA:   3'- -UUGCUgCGUU-----UGUuAGUAGaaCGCGG- -5'
28724 5' -47.8 NC_006146.1 + 155428 0.67 0.998818
Target:  5'- cACG-CGCAGGCAcagcgucucgGUCAgggucucgcUCUgcUGCGCCa -3'
miRNA:   3'- uUGCuGCGUUUGU----------UAGU---------AGA--ACGCGG- -5'
28724 5' -47.8 NC_006146.1 + 102197 0.68 0.997908
Target:  5'- cGGgGACGCGGACGG-CGUCaaaGCGCUu -3'
miRNA:   3'- -UUgCUGCGUUUGUUaGUAGaa-CGCGG- -5'
28724 5' -47.8 NC_006146.1 + 125310 0.68 0.997908
Target:  5'- gGGCGugGUAAAUu-UCAUCUgGCauGCCa -3'
miRNA:   3'- -UUGCugCGUUUGuuAGUAGAaCG--CGG- -5'
28724 5' -47.8 NC_006146.1 + 104169 0.69 0.996473
Target:  5'- gAGCGACuGCAGAucCAGUCGcagggccgUCU-GCGCCc -3'
miRNA:   3'- -UUGCUG-CGUUU--GUUAGU--------AGAaCGCGG- -5'
28724 5' -47.8 NC_006146.1 + 110302 0.69 0.995125
Target:  5'- -uCGGCGUAGGCGuUCAUCgc-CGCCc -3'
miRNA:   3'- uuGCUGCGUUUGUuAGUAGaacGCGG- -5'
28724 5' -47.8 NC_006146.1 + 50287 0.69 0.995125
Target:  5'- aAGgGGCGCAGGaGAUCuGUCagGCGCCg -3'
miRNA:   3'- -UUgCUGCGUUUgUUAG-UAGaaCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.