Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28724 | 5' | -47.8 | NC_006146.1 | + | 32061 | 0.67 | 0.999199 |
|
Target: 5'- gGGCGugGCGAGCAucgGUCAgCUgaccaaaUGUGCa -3' miRNA: 3'- -UUGCugCGUUUGU---UAGUaGA-------ACGCGg -5' |
|||||||
| 28724 | 5' | -47.8 | NC_006146.1 | + | 166890 | 0.67 | 0.998818 |
|
Target: 5'- gAGCGGgGCAAaggccGCGuUCAUCa-GCGCCu -3' miRNA: 3'- -UUGCUgCGUU-----UGUuAGUAGaaCGCGG- -5' |
|||||||
| 28724 | 5' | -47.8 | NC_006146.1 | + | 102197 | 0.68 | 0.997908 |
|
Target: 5'- cGGgGACGCGGACGG-CGUCaaaGCGCUu -3' miRNA: 3'- -UUgCUGCGUUUGUUaGUAGaa-CGCGG- -5' |
|||||||
| 28724 | 5' | -47.8 | NC_006146.1 | + | 110302 | 0.69 | 0.995125 |
|
Target: 5'- -uCGGCGUAGGCGuUCAUCgc-CGCCc -3' miRNA: 3'- uuGCUGCGUUUGUuAGUAGaacGCGG- -5' |
|||||||
| 28724 | 5' | -47.8 | NC_006146.1 | + | 22462 | 0.7 | 0.989885 |
|
Target: 5'- gGACGAUGCcuGCAccagAUCAUacaGCGCCu -3' miRNA: 3'- -UUGCUGCGuuUGU----UAGUAgaaCGCGG- -5' |
|||||||
| 28724 | 5' | -47.8 | NC_006146.1 | + | 116014 | 0.71 | 0.985075 |
|
Target: 5'- aGACGGCGCGAGCGGaccCcgCUUaCGCCc -3' miRNA: 3'- -UUGCUGCGUUUGUUa--GuaGAAcGCGG- -5' |
|||||||
| 28724 | 5' | -47.8 | NC_006146.1 | + | 98288 | 0.71 | 0.985075 |
|
Target: 5'- uGCGAUGgAGACAAgccUCAUUUUGCgaguGCCg -3' miRNA: 3'- uUGCUGCgUUUGUU---AGUAGAACG----CGG- -5' |
|||||||
| 28724 | 5' | -47.8 | NC_006146.1 | + | 121861 | 0.71 | 0.983135 |
|
Target: 5'- uACGACGC-GACGGUC-UCgggccGCGCCc -3' miRNA: 3'- uUGCUGCGuUUGUUAGuAGaa---CGCGG- -5' |
|||||||
| 28724 | 5' | -47.8 | NC_006146.1 | + | 84188 | 0.66 | 0.999803 |
|
Target: 5'- uAGCGAUGCuuGCuc-CAUCgcGUGCCc -3' miRNA: 3'- -UUGCUGCGuuUGuuaGUAGaaCGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home