miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 130064 0.66 0.990223
Target:  5'- aAAGGUCAAGC--UCGGCCGGGaacaCCa -3'
miRNA:   3'- gUUUCGGUUUGacAGCCGGUUCga--GG- -5'
28726 5' -51.2 NC_006146.1 + 16167 0.66 0.991457
Target:  5'- gGAAGCCGAGCguUGUCuugcugcuGGCCGcccuggugGGCUgCa -3'
miRNA:   3'- gUUUCGGUUUG--ACAG--------CCGGU--------UCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 68020 0.66 0.991457
Target:  5'- -uAAGCgCAAACUGgggccCGGCCAcgaccagguggcGGCUgCCc -3'
miRNA:   3'- guUUCG-GUUUGACa----GCCGGU------------UCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 91209 0.66 0.991457
Target:  5'- ---cGCCugcCUGUUGGCCGGuCUCUg -3'
miRNA:   3'- guuuCGGuuuGACAGCCGGUUcGAGG- -5'
28726 5' -51.2 NC_006146.1 + 3059 0.66 0.992564
Target:  5'- ---cGCCGAgaGCgcGUUGGCCcAGGCUaCCg -3'
miRNA:   3'- guuuCGGUU--UGa-CAGCCGG-UUCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 54305 0.67 0.979654
Target:  5'- gGAAGC--GACgUGU-GGCCAGGCUCa -3'
miRNA:   3'- gUUUCGguUUG-ACAgCCGGUUCGAGg -5'
28726 5' -51.2 NC_006146.1 + 73508 0.67 0.98514
Target:  5'- gCGGGGUCAcGCgcaggcuuacuuuuUGcaUGGCCAGGCUCCg -3'
miRNA:   3'- -GUUUCGGUuUG--------------ACa-GCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 60789 0.67 0.985671
Target:  5'- gGGAGCCGGACcagGUCcagGGCCu-GgUCCg -3'
miRNA:   3'- gUUUCGGUUUGa--CAG---CCGGuuCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 38061 0.67 0.981838
Target:  5'- cCAGAGUCAGGCUGU-GGCCAAa---- -3'
miRNA:   3'- -GUUUCGGUUUGACAgCCGGUUcgagg -5'
28726 5' -51.2 NC_006146.1 + 101419 0.67 0.979654
Target:  5'- aCGAGGCgGucuuCgucUCGGCCAAGCUgCa -3'
miRNA:   3'- -GUUUCGgUuu--Gac-AGCCGGUUCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 151807 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 47526 0.67 0.983648
Target:  5'- --cAGCCAggUUGcggggccccCGGCCAgcgccagAGCUCCc -3'
miRNA:   3'- guuUCGGUuuGACa--------GCCGGU-------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 119292 0.67 0.981627
Target:  5'- aCGGAcGCCGAAgUGUgguacgcUGGCCccucuGGCUCCc -3'
miRNA:   3'- -GUUU-CGGUUUgACA-------GCCGGu----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 127055 0.67 0.987339
Target:  5'- aGAGGCCcucGAGCUGgCGGCgCGGGaagCCg -3'
miRNA:   3'- gUUUCGG---UUUGACaGCCG-GUUCga-GG- -5'
28726 5' -51.2 NC_006146.1 + 152804 0.67 0.987339
Target:  5'- gGAGGCCcgcuGCUcGUCGcGCgAguacAGCUCCa -3'
miRNA:   3'- gUUUCGGuu--UGA-CAGC-CGgU----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 28498 0.67 0.987339
Target:  5'- ---cGCCAGGCgggGUcCGGCCu--CUCCu -3'
miRNA:   3'- guuuCGGUUUGa--CA-GCCGGuucGAGG- -5'
28726 5' -51.2 NC_006146.1 + 139123 0.67 0.979654
Target:  5'- ---uGUCAAuuggggGCUGUgGGCCGaacgggGGCUCCc -3'
miRNA:   3'- guuuCGGUU------UGACAgCCGGU------UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 64194 0.67 0.98384
Target:  5'- aGGAGUugCAAGgUGUC-GCgGAGCUCCg -3'
miRNA:   3'- gUUUCG--GUUUgACAGcCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 157963 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 154885 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.