Results 41 - 60 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 38061 | 0.67 | 0.981838 |
Target: 5'- cCAGAGUCAGGCUGU-GGCCAAa---- -3' miRNA: 3'- -GUUUCGGUUUGACAgCCGGUUcgagg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 38285 | 0.67 | 0.985671 |
Target: 5'- -cGGGCCAcACUGcCGGCCcu-UUCCa -3' miRNA: 3'- guUUCGGUuUGACaGCCGGuucGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 39308 | 0.66 | 0.994436 |
Target: 5'- aGAGGCCuguguACUGggcUCGGCUGGcCUCCc -3' miRNA: 3'- gUUUCGGuu---UGAC---AGCCGGUUcGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 39545 | 0.66 | 0.988853 |
Target: 5'- aAAAGUgGAGCUGgaugucaaUGGCCAGGaUCCu -3' miRNA: 3'- gUUUCGgUUUGACa-------GCCGGUUCgAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 39654 | 0.66 | 0.994436 |
Target: 5'- -uGGGCUgAGACUGccUUGGCCuuggaggcggcGGGCUCCu -3' miRNA: 3'- guUUCGG-UUUGAC--AGCCGG-----------UUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 39775 | 0.72 | 0.850275 |
Target: 5'- uGGAGUCAGGCU-UgGGCCcgGAGCUCCc -3' miRNA: 3'- gUUUCGGUUUGAcAgCCGG--UUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 40027 | 0.66 | 0.992564 |
Target: 5'- gGGGGCCu-GCUGggGGCCGuAGCcgacUCCg -3' miRNA: 3'- gUUUCGGuuUGACagCCGGU-UCG----AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 41356 | 0.7 | 0.936641 |
Target: 5'- cCAGGGCCuGGCgGUggUGGCCGuGGCUCUg -3' miRNA: 3'- -GUUUCGGuUUGaCA--GCCGGU-UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 42907 | 0.74 | 0.778864 |
Target: 5'- cUAGGGCCucugucccGGCUGUCagcagcggcGCCAAGCUCCg -3' miRNA: 3'- -GUUUCGGu-------UUGACAGc--------CGGUUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 43519 | 0.74 | 0.749513 |
Target: 5'- -cGGGCCAGGCUGcCGGCCAccaucaguggGGUgUCCg -3' miRNA: 3'- guUUCGGUUUGACaGCCGGU----------UCG-AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 43741 | 0.67 | 0.987339 |
Target: 5'- -cGGGCCAggUgGUCGcgcaugacGCCGuccAGCUCCa -3' miRNA: 3'- guUUCGGUuuGaCAGC--------CGGU---UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 45242 | 0.68 | 0.967045 |
Target: 5'- gGAGGCUggGgugUUGUCGGCCGAuuggaacccguccccGCUCa -3' miRNA: 3'- gUUUCGGuuU---GACAGCCGGUU---------------CGAGg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 45442 | 0.68 | 0.968944 |
Target: 5'- uGAAGUgGAACUGUaGGUCAGGCa-- -3' miRNA: 3'- gUUUCGgUUUGACAgCCGGUUCGagg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 45657 | 0.69 | 0.946182 |
Target: 5'- aCAGAGUCcGGCgccaGGCCAguGGCUCCc -3' miRNA: 3'- -GUUUCGGuUUGacagCCGGU--UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 46181 | 0.69 | 0.950576 |
Target: 5'- uGGGGCCAGAgaG-CGGCCcGAGuCUCUa -3' miRNA: 3'- gUUUCGGUUUgaCaGCCGG-UUC-GAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 46302 | 0.69 | 0.949284 |
Target: 5'- --cGGUCGAGCUcGagccccucuuccucUCGGCCGGGCUUCu -3' miRNA: 3'- guuUCGGUUUGA-C--------------AGCCGGUUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 46401 | 0.69 | 0.954724 |
Target: 5'- cCAGGGCCGAGacca-GGCCGAGUcCCg -3' miRNA: 3'- -GUUUCGGUUUgacagCCGGUUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 46596 | 0.74 | 0.78838 |
Target: 5'- uCAuGGCCacgaugGggUUGUCGGCCAGGUcuUCCa -3' miRNA: 3'- -GUuUCGG------UuuGACAGCCGGUUCG--AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 46698 | 0.73 | 0.833524 |
Target: 5'- aGGAGUCccaguAAgaGUCGGCCGcggcGGCUCCg -3' miRNA: 3'- gUUUCGGu----UUgaCAGCCGGU----UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 46741 | 0.7 | 0.920427 |
Target: 5'- gGAGGCCAcGCU---GGCCAGGgUCCu -3' miRNA: 3'- gUUUCGGUuUGAcagCCGGUUCgAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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