miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 131066 0.69 0.95863
Target:  5'- ---cGCCGGcccACUGUgCGGCCGAGg-CCg -3'
miRNA:   3'- guuuCGGUU---UGACA-GCCGGUUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 130064 0.66 0.990223
Target:  5'- aAAGGUCAAGC--UCGGCCGGGaacaCCa -3'
miRNA:   3'- gUUUCGGUUUGacAGCCGGUUCga--GG- -5'
28726 5' -51.2 NC_006146.1 + 128274 0.72 0.881193
Target:  5'- uGAGGCCcacGGCgg-CGGCCGAGCcCCa -3'
miRNA:   3'- gUUUCGGu--UUGacaGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 128217 0.66 0.990223
Target:  5'- -cGGGCCAGACgcucuuUCGGCgCGgggAGCUCUu -3'
miRNA:   3'- guUUCGGUUUGac----AGCCG-GU---UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 128141 0.7 0.931491
Target:  5'- ---cGCCugcacCUGUCGGCCcuGCUgCCg -3'
miRNA:   3'- guuuCGGuuu--GACAGCCGGuuCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 127420 0.66 0.988709
Target:  5'- cCGGAGCCGGugUcaaCGGCCGccgaggaGGCUgCCg -3'
miRNA:   3'- -GUUUCGGUUugAca-GCCGGU-------UCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 127055 0.67 0.987339
Target:  5'- aGAGGCCcucGAGCUGgCGGCgCGGGaagCCg -3'
miRNA:   3'- gUUUCGG---UUUGACaGCCG-GUUCga-GG- -5'
28726 5' -51.2 NC_006146.1 + 125358 0.74 0.778864
Target:  5'- gGAGGCCAGGg---CGGCCAAGC-CCa -3'
miRNA:   3'- gUUUCGGUUUgacaGCCGGUUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 123498 0.66 0.992564
Target:  5'- --uGGUCAucAGCaUGgCGGCCAGacGCUCCa -3'
miRNA:   3'- guuUCGGU--UUG-ACaGCCGGUU--CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 123259 0.7 0.936641
Target:  5'- -uGGGCCGGGCcG-CGGCCAgagacGGCUCg -3'
miRNA:   3'- guUUCGGUUUGaCaGCCGGU-----UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 123028 0.68 0.968944
Target:  5'- cCGAGGCCGAGg---CGGCCcAGgUCCg -3'
miRNA:   3'- -GUUUCGGUUUgacaGCCGGuUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 122809 0.79 0.520834
Target:  5'- cCGAGGCCGcGCUGUCGGCCGccgugAGCg-- -3'
miRNA:   3'- -GUUUCGGUuUGACAGCCGGU-----UCGagg -5'
28726 5' -51.2 NC_006146.1 + 122564 0.66 0.990223
Target:  5'- --uGGCCAGACUGgacGCCuGGC-CCa -3'
miRNA:   3'- guuUCGGUUUGACagcCGGuUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 121341 0.73 0.842001
Target:  5'- uCGAGGCCAuGCUGggccUGGCCGgcguGGcCUCCg -3'
miRNA:   3'- -GUUUCGGUuUGACa---GCCGGU----UC-GAGG- -5'
28726 5' -51.2 NC_006146.1 + 120538 0.7 0.941537
Target:  5'- --cGGCgGGACUGcUGGCCAAGaUCCc -3'
miRNA:   3'- guuUCGgUUUGACaGCCGGUUCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 119292 0.67 0.981627
Target:  5'- aCGGAcGCCGAAgUGUgguacgcUGGCCccucuGGCUCCc -3'
miRNA:   3'- -GUUU-CGGUUUgACA-------GCCGGu----UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 117720 0.69 0.946182
Target:  5'- cCAAGGCCGGGgccgaGGCCGAGCcuUCCg -3'
miRNA:   3'- -GUUUCGGUUUgacagCCGGUUCG--AGG- -5'
28726 5' -51.2 NC_006146.1 + 117252 0.72 0.850275
Target:  5'- cCGGGGCCAGGgggGUCGGC-AGGUUCCc -3'
miRNA:   3'- -GUUUCGGUUUga-CAGCCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 116647 0.66 0.990223
Target:  5'- aCAuGGCCAcaAACUGggCGGCCAucucgUCCa -3'
miRNA:   3'- -GUuUCGGU--UUGACa-GCCGGUucg--AGG- -5'
28726 5' -51.2 NC_006146.1 + 115410 0.68 0.971933
Target:  5'- gGAGGCa--GCUGgCGGCCGGGcCUCg -3'
miRNA:   3'- gUUUCGguuUGACaGCCGGUUC-GAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.