miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28726 5' -51.2 NC_006146.1 + 165789 0.66 0.992564
Target:  5'- uCAGAGCCAcGgUGgcaCGGCCGgcuaggggGGCgUCCc -3'
miRNA:   3'- -GUUUCGGUuUgACa--GCCGGU--------UCG-AGG- -5'
28726 5' -51.2 NC_006146.1 + 138215 0.66 0.993554
Target:  5'- uGAGGCUggGCUGaCGGggaUAAGCaUCCc -3'
miRNA:   3'- gUUUCGGuuUGACaGCCg--GUUCG-AGG- -5'
28726 5' -51.2 NC_006146.1 + 14758 0.66 0.993554
Target:  5'- aCGAGGUCAGGCa---GGCgGGGCUCg -3'
miRNA:   3'- -GUUUCGGUUUGacagCCGgUUCGAGg -5'
28726 5' -51.2 NC_006146.1 + 39654 0.66 0.994436
Target:  5'- -uGGGCUgAGACUGccUUGGCCuuggaggcggcGGGCUCCu -3'
miRNA:   3'- guUUCGG-UUUGAC--AGCCGG-----------UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 14164 0.66 0.994436
Target:  5'- uGGAGCUGAGC-GUCuGcGCCAGGCUg- -3'
miRNA:   3'- gUUUCGGUUUGaCAG-C-CGGUUCGAgg -5'
28726 5' -51.2 NC_006146.1 + 68020 0.66 0.991457
Target:  5'- -uAAGCgCAAACUGgggccCGGCCAcgaccagguggcGGCUgCCc -3'
miRNA:   3'- guUUCG-GUUUGACa----GCCGGU------------UCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 16167 0.66 0.991457
Target:  5'- gGAAGCCGAGCguUGUCuugcugcuGGCCGcccuggugGGCUgCa -3'
miRNA:   3'- gUUUCGGUUUG--ACAG--------CCGGU--------UCGAgG- -5'
28726 5' -51.2 NC_006146.1 + 157963 0.67 0.98384
Target:  5'- cCAAGGCCAccgGGCgg--GGCCAGGgcCUCCa -3'
miRNA:   3'- -GUUUCGGU---UUGacagCCGGUUC--GAGG- -5'
28726 5' -51.2 NC_006146.1 + 64194 0.67 0.98384
Target:  5'- aGGAGUugCAAGgUGUC-GCgGAGCUCCg -3'
miRNA:   3'- gUUUCG--GUUUgACAGcCGgUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 73508 0.67 0.98514
Target:  5'- gCGGGGUCAcGCgcaggcuuacuuuuUGcaUGGCCAGGCUCCg -3'
miRNA:   3'- -GUUUCGGUuUG--------------ACa-GCCGGUUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 60789 0.67 0.985671
Target:  5'- gGGAGCCGGACcagGUCcagGGCCu-GgUCCg -3'
miRNA:   3'- gUUUCGGUUUGa--CAG---CCGGuuCgAGG- -5'
28726 5' -51.2 NC_006146.1 + 74572 0.67 0.985671
Target:  5'- ----aCCGGGCUGUCgaaGGUCAcuGCUCCg -3'
miRNA:   3'- guuucGGUUUGACAG---CCGGUu-CGAGG- -5'
28726 5' -51.2 NC_006146.1 + 20707 0.67 0.987339
Target:  5'- gCAAGGCCAuuaagaAGCUGcuggCGGCCugcGAGgaCCc -3'
miRNA:   3'- -GUUUCGGU------UUGACa---GCCGG---UUCgaGG- -5'
28726 5' -51.2 NC_006146.1 + 13566 0.67 0.987339
Target:  5'- ---cGCCGGGCUGcgcaagcaGGCCGggGGCUCa -3'
miRNA:   3'- guuuCGGUUUGACag------CCGGU--UCGAGg -5'
28726 5' -51.2 NC_006146.1 + 137039 0.67 0.987339
Target:  5'- gGAGGCCGGG-UGggGGCCugGGGUUCCg -3'
miRNA:   3'- gUUUCGGUUUgACagCCGG--UUCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 43741 0.67 0.987339
Target:  5'- -cGGGCCAggUgGUCGcgcaugacGCCGuccAGCUCCa -3'
miRNA:   3'- guUUCGGUuuGaCAGC--------CGGU---UCGAGG- -5'
28726 5' -51.2 NC_006146.1 + 127420 0.66 0.988709
Target:  5'- cCGGAGCCGGugUcaaCGGCCGccgaggaGGCUgCCg -3'
miRNA:   3'- -GUUUCGGUUugAca-GCCGGU-------UCGA-GG- -5'
28726 5' -51.2 NC_006146.1 + 122564 0.66 0.990223
Target:  5'- --uGGCCAGACUGgacGCCuGGC-CCa -3'
miRNA:   3'- guuUCGGUUUGACagcCGGuUCGaGG- -5'
28726 5' -51.2 NC_006146.1 + 61591 0.66 0.990223
Target:  5'- aAGAGCC-GGCUGcagCGGCCGcGGCcggggCCg -3'
miRNA:   3'- gUUUCGGuUUGACa--GCCGGU-UCGa----GG- -5'
28726 5' -51.2 NC_006146.1 + 130064 0.66 0.990223
Target:  5'- aAAGGUCAAGC--UCGGCCGGGaacaCCa -3'
miRNA:   3'- gUUUCGGUUUGacAGCCGGUUCga--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.