miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28727 3' -53.1 NC_006146.1 + 162431 0.66 0.982142
Target:  5'- gGUAGCGGgaGAgaaaGCUAUCcaucuguuuUCAGCUCGc -3'
miRNA:   3'- -CGUCGCCg-CUg---UGAUAGu--------AGUCGAGC- -5'
28727 3' -53.1 NC_006146.1 + 53166 0.66 0.982142
Target:  5'- uGCGGCGGUGGC-Cggaa---GGCUCGg -3'
miRNA:   3'- -CGUCGCCGCUGuGauaguagUCGAGC- -5'
28727 3' -53.1 NC_006146.1 + 49499 0.66 0.982142
Target:  5'- aGgGGCGGCGugGC-AUCuggAUCGGCg-- -3'
miRNA:   3'- -CgUCGCCGCugUGaUAG---UAGUCGagc -5'
28727 3' -53.1 NC_006146.1 + 125103 0.66 0.977736
Target:  5'- cGUGGCGGCGGC-CU-UCcUCGGC-CGu -3'
miRNA:   3'- -CGUCGCCGCUGuGAuAGuAGUCGaGC- -5'
28727 3' -53.1 NC_006146.1 + 57373 0.66 0.977736
Target:  5'- uGCGGCGGUGGCGCcg--GUgGGCUgGc -3'
miRNA:   3'- -CGUCGCCGCUGUGauagUAgUCGAgC- -5'
28727 3' -53.1 NC_006146.1 + 137732 0.66 0.972576
Target:  5'- -gAGCGGCGGCGCgg-CGgugccCAGC-CGg -3'
miRNA:   3'- cgUCGCCGCUGUGauaGUa----GUCGaGC- -5'
28727 3' -53.1 NC_006146.1 + 84887 0.66 0.972576
Target:  5'- aGUGGCaGCGACACUggCAaCAGCg-- -3'
miRNA:   3'- -CGUCGcCGCUGUGAuaGUaGUCGagc -5'
28727 3' -53.1 NC_006146.1 + 45180 0.67 0.969694
Target:  5'- uCGGCGGCGGCGCUccccuccUCAUCuucCUCc -3'
miRNA:   3'- cGUCGCCGCUGUGAu------AGUAGuc-GAGc -5'
28727 3' -53.1 NC_006146.1 + 75968 0.67 0.966603
Target:  5'- cGCAGCGGCcACGucccCUgcAUCGUCugcgugGGCUCGc -3'
miRNA:   3'- -CGUCGCCGcUGU----GA--UAGUAG------UCGAGC- -5'
28727 3' -53.1 NC_006146.1 + 46292 0.67 0.966603
Target:  5'- cCGGUGGCGGCG--GUCG--AGCUCGa -3'
miRNA:   3'- cGUCGCCGCUGUgaUAGUagUCGAGC- -5'
28727 3' -53.1 NC_006146.1 + 156928 0.67 0.963296
Target:  5'- -gGGUGGCGGCGCUGaCG--GGCUCc -3'
miRNA:   3'- cgUCGCCGCUGUGAUaGUagUCGAGc -5'
28727 3' -53.1 NC_006146.1 + 126264 0.67 0.963296
Target:  5'- uCGGCGGgGGCAaaGUCGUCAauCUCGg -3'
miRNA:   3'- cGUCGCCgCUGUgaUAGUAGUc-GAGC- -5'
28727 3' -53.1 NC_006146.1 + 80099 0.67 0.959767
Target:  5'- -gGGUGGCGACACUGggu---GCUCa -3'
miRNA:   3'- cgUCGCCGCUGUGAUaguaguCGAGc -5'
28727 3' -53.1 NC_006146.1 + 77431 0.67 0.952023
Target:  5'- uGCGGCaucCGAgACUAUggCAUCAGCUCc -3'
miRNA:   3'- -CGUCGcc-GCUgUGAUA--GUAGUCGAGc -5'
28727 3' -53.1 NC_006146.1 + 104447 0.68 0.947799
Target:  5'- aCAGgGGCGGCGCccUCGgcaggCAGCUgCGg -3'
miRNA:   3'- cGUCgCCGCUGUGauAGUa----GUCGA-GC- -5'
28727 3' -53.1 NC_006146.1 + 110849 0.68 0.93815
Target:  5'- -aGGCGGCgcccgaucagaggGACGCUG-CGUCucgGGCUCGg -3'
miRNA:   3'- cgUCGCCG-------------CUGUGAUaGUAG---UCGAGC- -5'
28727 3' -53.1 NC_006146.1 + 137913 0.68 0.933686
Target:  5'- gGUAGCGGCGGCACUGaaAUUuGUUUc -3'
miRNA:   3'- -CGUCGCCGCUGUGAUagUAGuCGAGc -5'
28727 3' -53.1 NC_006146.1 + 53859 0.69 0.917376
Target:  5'- gGCGGUaGGCGACGCUGgcccUCAGCg-- -3'
miRNA:   3'- -CGUCG-CCGCUGUGAUagu-AGUCGagc -5'
28727 3' -53.1 NC_006146.1 + 167316 0.69 0.898218
Target:  5'- uGCAGggggggcCGGCGGgGCgucccGUCGUCAcGCUCGg -3'
miRNA:   3'- -CGUC-------GCCGCUgUGa----UAGUAGU-CGAGC- -5'
28727 3' -53.1 NC_006146.1 + 169180 0.69 0.898218
Target:  5'- uGCAGggggggcCGGCGGgGCgucccGUCGUCAcGCUCGg -3'
miRNA:   3'- -CGUC-------GCCGCUgUGa----UAGUAGU-CGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.