Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28727 | 3' | -53.1 | NC_006146.1 | + | 162431 | 0.66 | 0.982142 |
Target: 5'- gGUAGCGGgaGAgaaaGCUAUCcaucuguuuUCAGCUCGc -3' miRNA: 3'- -CGUCGCCg-CUg---UGAUAGu--------AGUCGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 53166 | 0.66 | 0.982142 |
Target: 5'- uGCGGCGGUGGC-Cggaa---GGCUCGg -3' miRNA: 3'- -CGUCGCCGCUGuGauaguagUCGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 49499 | 0.66 | 0.982142 |
Target: 5'- aGgGGCGGCGugGC-AUCuggAUCGGCg-- -3' miRNA: 3'- -CgUCGCCGCugUGaUAG---UAGUCGagc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 125103 | 0.66 | 0.977736 |
Target: 5'- cGUGGCGGCGGC-CU-UCcUCGGC-CGu -3' miRNA: 3'- -CGUCGCCGCUGuGAuAGuAGUCGaGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 57373 | 0.66 | 0.977736 |
Target: 5'- uGCGGCGGUGGCGCcg--GUgGGCUgGc -3' miRNA: 3'- -CGUCGCCGCUGUGauagUAgUCGAgC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 137732 | 0.66 | 0.972576 |
Target: 5'- -gAGCGGCGGCGCgg-CGgugccCAGC-CGg -3' miRNA: 3'- cgUCGCCGCUGUGauaGUa----GUCGaGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 84887 | 0.66 | 0.972576 |
Target: 5'- aGUGGCaGCGACACUggCAaCAGCg-- -3' miRNA: 3'- -CGUCGcCGCUGUGAuaGUaGUCGagc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 45180 | 0.67 | 0.969694 |
Target: 5'- uCGGCGGCGGCGCUccccuccUCAUCuucCUCc -3' miRNA: 3'- cGUCGCCGCUGUGAu------AGUAGuc-GAGc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 75968 | 0.67 | 0.966603 |
Target: 5'- cGCAGCGGCcACGucccCUgcAUCGUCugcgugGGCUCGc -3' miRNA: 3'- -CGUCGCCGcUGU----GA--UAGUAG------UCGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 46292 | 0.67 | 0.966603 |
Target: 5'- cCGGUGGCGGCG--GUCG--AGCUCGa -3' miRNA: 3'- cGUCGCCGCUGUgaUAGUagUCGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 156928 | 0.67 | 0.963296 |
Target: 5'- -gGGUGGCGGCGCUGaCG--GGCUCc -3' miRNA: 3'- cgUCGCCGCUGUGAUaGUagUCGAGc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 126264 | 0.67 | 0.963296 |
Target: 5'- uCGGCGGgGGCAaaGUCGUCAauCUCGg -3' miRNA: 3'- cGUCGCCgCUGUgaUAGUAGUc-GAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 80099 | 0.67 | 0.959767 |
Target: 5'- -gGGUGGCGACACUGggu---GCUCa -3' miRNA: 3'- cgUCGCCGCUGUGAUaguaguCGAGc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 77431 | 0.67 | 0.952023 |
Target: 5'- uGCGGCaucCGAgACUAUggCAUCAGCUCc -3' miRNA: 3'- -CGUCGcc-GCUgUGAUA--GUAGUCGAGc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 104447 | 0.68 | 0.947799 |
Target: 5'- aCAGgGGCGGCGCccUCGgcaggCAGCUgCGg -3' miRNA: 3'- cGUCgCCGCUGUGauAGUa----GUCGA-GC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 110849 | 0.68 | 0.93815 |
Target: 5'- -aGGCGGCgcccgaucagaggGACGCUG-CGUCucgGGCUCGg -3' miRNA: 3'- cgUCGCCG-------------CUGUGAUaGUAG---UCGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 137913 | 0.68 | 0.933686 |
Target: 5'- gGUAGCGGCGGCACUGaaAUUuGUUUc -3' miRNA: 3'- -CGUCGCCGCUGUGAUagUAGuCGAGc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 53859 | 0.69 | 0.917376 |
Target: 5'- gGCGGUaGGCGACGCUGgcccUCAGCg-- -3' miRNA: 3'- -CGUCG-CCGCUGUGAUagu-AGUCGagc -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 167316 | 0.69 | 0.898218 |
Target: 5'- uGCAGggggggcCGGCGGgGCgucccGUCGUCAcGCUCGg -3' miRNA: 3'- -CGUC-------GCCGCUgUGa----UAGUAGU-CGAGC- -5' |
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28727 | 3' | -53.1 | NC_006146.1 | + | 169180 | 0.69 | 0.898218 |
Target: 5'- uGCAGggggggcCGGCGGgGCgucccGUCGUCAcGCUCGg -3' miRNA: 3'- -CGUC-------GCCGCUgUGa----UAGUAGU-CGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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