Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28728 | 5' | -58.8 | NC_006146.1 | + | 123311 | 0.66 | 0.808031 |
Target: 5'- gGCCGCCgagUGGaUCcGGGAcGUCUGCg- -3' miRNA: 3'- -UGGCGGa--ACC-AGaCCUUcCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 23781 | 0.66 | 0.808031 |
Target: 5'- gGCgGCCUgcgcGUCUGG--GGCCcGCUGa -3' miRNA: 3'- -UGgCGGAac--CAGACCuuCCGGaCGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 71863 | 0.66 | 0.799255 |
Target: 5'- cCCGCCg-GGccCUGGggGGCCU-CUa -3' miRNA: 3'- uGGCGGaaCCa-GACCuuCCGGAcGAc -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 64730 | 0.66 | 0.799255 |
Target: 5'- uGCagaGCCcUGcGuUCUGGAuGGCCUGCa- -3' miRNA: 3'- -UGg--CGGaAC-C-AGACCUuCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 141299 | 0.66 | 0.790332 |
Target: 5'- gGCgGCUgggGGUCgGGcuGGCCUGCc- -3' miRNA: 3'- -UGgCGGaa-CCAGaCCuuCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 144377 | 0.66 | 0.790332 |
Target: 5'- gGCgGCUgggGGUCgGGcuGGCCUGCc- -3' miRNA: 3'- -UGgCGGaa-CCAGaCCuuCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 147455 | 0.66 | 0.790332 |
Target: 5'- gGCgGCUgggGGUCgGGcuGGCCUGCc- -3' miRNA: 3'- -UGgCGGaa-CCAGaCCuuCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 150533 | 0.66 | 0.790332 |
Target: 5'- gGCgGCUgggGGUCgGGcuGGCCUGCc- -3' miRNA: 3'- -UGgCGGaa-CCAGaCCuuCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 153611 | 0.66 | 0.790332 |
Target: 5'- gGCgGCUgggGGUCgGGcuGGCCUGCc- -3' miRNA: 3'- -UGgCGGaa-CCAGaCCuuCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 156688 | 0.66 | 0.790332 |
Target: 5'- gGCgGCUgggGGUCgGGcuGGCCUGCc- -3' miRNA: 3'- -UGgCGGaa-CCAGaCCuuCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 39995 | 0.66 | 0.781271 |
Target: 5'- uGCgGCCcguaguggccGGUgUGGGcguagcaggGGGCCUGCUGg -3' miRNA: 3'- -UGgCGGaa--------CCAgACCU---------UCCGGACGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 3793 | 0.66 | 0.775771 |
Target: 5'- -aCGCCUUuguggcccacagucaGGUCUGGGucAGGCCagGCg- -3' miRNA: 3'- ugGCGGAA---------------CCAGACCU--UCCGGa-CGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 70143 | 0.66 | 0.772079 |
Target: 5'- uGCCGCCUUcGcCUGGcuccuGGCCggggcGCUGg -3' miRNA: 3'- -UGGCGGAAcCaGACCuu---CCGGa----CGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 96744 | 0.66 | 0.772079 |
Target: 5'- cCCGCaccGGUUUGaAGGuGCCUGCUGa -3' miRNA: 3'- uGGCGgaaCCAGACcUUC-CGGACGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 33240 | 0.67 | 0.743808 |
Target: 5'- gGCCGCCggcgGGUCcGccGGGCC-GCUGc -3' miRNA: 3'- -UGGCGGaa--CCAGaCcuUCCGGaCGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 33362 | 0.67 | 0.743808 |
Target: 5'- gGCCGCCggugGGUCcGccGGGCC-GCUGc -3' miRNA: 3'- -UGGCGGaa--CCAGaCcuUCCGGaCGAC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 100278 | 0.67 | 0.734182 |
Target: 5'- aGCCuCCUagcgGGggCUGGcAGGCCUGCa- -3' miRNA: 3'- -UGGcGGAa---CCa-GACCuUCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 15965 | 0.67 | 0.734182 |
Target: 5'- gGCCgGUCUcgGGUCUGG-GGGUCUGUg- -3' miRNA: 3'- -UGG-CGGAa-CCAGACCuUCCGGACGac -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 149867 | 0.67 | 0.714681 |
Target: 5'- --gGCCUggGGcCUcGGAGGGCCUGgaGg -3' miRNA: 3'- uggCGGAa-CCaGA-CCUUCCGGACgaC- -5' |
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28728 | 5' | -58.8 | NC_006146.1 | + | 146789 | 0.67 | 0.714681 |
Target: 5'- --gGCCUggGGcCUcGGAGGGCCUGgaGg -3' miRNA: 3'- uggCGGAa-CCaGA-CCUUCCGGACgaC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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