miRNA display CGI


Results 61 - 80 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28729 3' -62.4 NC_006146.1 + 34073 0.7 0.386973
Target:  5'- gUGGcacGGGGCCGgG-GGUCCCgGGGGGCa -3'
miRNA:   3'- -ACU---UCCCGGUgCgCCGGGGgUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 49752 0.7 0.395027
Target:  5'- --cAGGGgCGCGCGGCCcaggCCCAGAcgccGGCu -3'
miRNA:   3'- acuUCCCgGUGCGCCGG----GGGUCU----CUG- -5'
28729 3' -62.4 NC_006146.1 + 154237 0.7 0.395027
Target:  5'- cUGGAGGGcCCugGgaGGCCCCUguccgcgagGGAGAg -3'
miRNA:   3'- -ACUUCCC-GGugCg-CCGGGGG---------UCUCUg -5'
28729 3' -62.4 NC_006146.1 + 151159 0.7 0.395027
Target:  5'- cUGGAGGGcCCugGgaGGCCCCUguccgcgagGGAGAg -3'
miRNA:   3'- -ACUUCCC-GGugCg-CCGGGGG---------UCUCUg -5'
28729 3' -62.4 NC_006146.1 + 148081 0.7 0.395027
Target:  5'- cUGGAGGGcCCugGgaGGCCCCUguccgcgagGGAGAg -3'
miRNA:   3'- -ACUUCCC-GGugCg-CCGGGGG---------UCUCUg -5'
28729 3' -62.4 NC_006146.1 + 145003 0.7 0.395027
Target:  5'- cUGGAGGGcCCugGgaGGCCCCUguccgcgagGGAGAg -3'
miRNA:   3'- -ACUUCCC-GGugCg-CCGGGGG---------UCUCUg -5'
28729 3' -62.4 NC_006146.1 + 141925 0.7 0.395027
Target:  5'- cUGGAGGGcCCugGgaGGCCCCUguccgcgagGGAGAg -3'
miRNA:   3'- -ACUUCCC-GGugCg-CCGGGGG---------UCUCUg -5'
28729 3' -62.4 NC_006146.1 + 121190 0.7 0.395027
Target:  5'- aUGAccGGCauucCGUGGCCCCUGGAGAg -3'
miRNA:   3'- -ACUucCCGgu--GCGCCGGGGGUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 157315 0.7 0.395027
Target:  5'- cUGGAGGGcCCugGgaGGCCCCUguccgcgagGGAGAg -3'
miRNA:   3'- -ACUUCCC-GGugCg-CCGGGGG---------UCUCUg -5'
28729 3' -62.4 NC_006146.1 + 49411 0.7 0.395027
Target:  5'- gGuGGGGUucUugGCGGCCCCCAcgauGGACc -3'
miRNA:   3'- aCuUCCCG--GugCGCCGGGGGUc---UCUG- -5'
28729 3' -62.4 NC_006146.1 + 51844 0.7 0.395027
Target:  5'- aGggGGGCU-CGgGGCCuggcccgagCCCGGGGAUg -3'
miRNA:   3'- aCuuCCCGGuGCgCCGG---------GGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 56124 0.7 0.395027
Target:  5'- cGAAGguGGCCGCG-GGCCCC--GAGACc -3'
miRNA:   3'- aCUUC--CCGGUGCgCCGGGGguCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 1232 0.7 0.403189
Target:  5'- gGgcGGGCCACGCGcGCCCgCCAc---- -3'
miRNA:   3'- aCuuCCCGGUGCGC-CGGG-GGUcucug -5'
28729 3' -62.4 NC_006146.1 + 50110 0.7 0.403189
Target:  5'- ----cGGCCACGCGGaccggcgaccuCCgCCAGGGACa -3'
miRNA:   3'- acuucCCGGUGCGCC-----------GGgGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 2164 0.7 0.403189
Target:  5'- gGgcGGGCCACGCGcGCCCgCCAc---- -3'
miRNA:   3'- aCuuCCCGGUGCGC-CGGG-GGUcucug -5'
28729 3' -62.4 NC_006146.1 + 3096 0.7 0.403189
Target:  5'- gGgcGGGCCACGCGcGCCCgCCAc---- -3'
miRNA:   3'- aCuuCCCGGUGCGC-CGGG-GGUcucug -5'
28729 3' -62.4 NC_006146.1 + 107771 0.7 0.411456
Target:  5'- cGGAGauGGCCA-GCGG-UCCCAGGGGCa -3'
miRNA:   3'- aCUUC--CCGGUgCGCCgGGGGUCUCUG- -5'
28729 3' -62.4 NC_006146.1 + 116888 0.7 0.411456
Target:  5'- cGGAGGcGCCACcuggugcCGGCCCUgAGGGAa -3'
miRNA:   3'- aCUUCC-CGGUGc------GCCGGGGgUCUCUg -5'
28729 3' -62.4 NC_006146.1 + 15994 0.7 0.411456
Target:  5'- cGAAGGGCgGaCGCGGUCagCCCGggcGAGGCc -3'
miRNA:   3'- aCUUCCCGgU-GCGCCGG--GGGU---CUCUG- -5'
28729 3' -62.4 NC_006146.1 + 163604 0.7 0.419828
Target:  5'- uUGAGGGGUCuugugGCGGUgCUUAGGGACa -3'
miRNA:   3'- -ACUUCCCGGug---CGCCGgGGGUCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.