miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 3' -59.6 NC_006146.1 + 19104 0.68 0.669717
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUgggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg---CAG- -5'
28730 3' -59.6 NC_006146.1 + 112286 0.68 0.669717
Target:  5'- aUGCCCGGGcACCUUucgugguucucGGGGaCCUuCGUCu -3'
miRNA:   3'- cAUGGGCUC-UGGAA-----------CCCCcGGA-GCAG- -5'
28730 3' -59.6 NC_006146.1 + 14844 0.68 0.669717
Target:  5'- -gGCCCGGGGCCgcGGGaGGCCg---- -3'
miRNA:   3'- caUGGGCUCUGGaaCCC-CCGGagcag -5'
28730 3' -59.6 NC_006146.1 + 22182 0.68 0.669717
Target:  5'- -cGCCCGGuGGCCUUGGGGuaGCuCUgggaGUCa -3'
miRNA:   3'- caUGGGCU-CUGGAACCCC--CG-GAg---CAG- -5'
28730 3' -59.6 NC_006146.1 + 123650 0.68 0.659825
Target:  5'- -cACCCG-GGCCa--GGGGCCaCGUCg -3'
miRNA:   3'- caUGGGCuCUGGaacCCCCGGaGCAG- -5'
28730 3' -59.6 NC_006146.1 + 136944 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 136387 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 136480 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 136573 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 136666 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 137037 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 135922 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 135829 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 95997 0.68 0.649912
Target:  5'- cUGCCUGGGGCCUUGGGa-UCUCGa- -3'
miRNA:   3'- cAUGGGCUCUGGAACCCccGGAGCag -5'
28730 3' -59.6 NC_006146.1 + 136108 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 136201 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 136015 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 135736 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5'
28730 3' -59.6 NC_006146.1 + 137217 0.68 0.649912
Target:  5'- --cCCCGGGgaggaaGCCgggUGGGGGCCUgGg- -3'
miRNA:   3'- cauGGGCUC------UGGa--ACCCCCGGAgCag -5'
28730 3' -59.6 NC_006146.1 + 137223 0.68 0.649912
Target:  5'- -aGCUCGGGGCC--GGGGGCCggGUg -3'
miRNA:   3'- caUGGGCUCUGGaaCCCCCGGagCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.