miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28730 5' -55 NC_006146.1 + 71693 0.65 0.951736
Target:  5'- gCGCCGAGGCC-GCGGC--CUCc--- -3'
miRNA:   3'- aGCGGCUCUGGuCGUCGaaGAGcaag -5'
28730 5' -55 NC_006146.1 + 114929 0.65 0.9505
Target:  5'- aCGCCGAGACCaaccgcuaccccugGGCGGCgauggCGg-- -3'
miRNA:   3'- aGCGGCUCUGG--------------UCGUCGaaga-GCaag -5'
28730 5' -55 NC_006146.1 + 76727 0.66 0.943097
Target:  5'- aCGCuCGAGGCCGaCAGCUUCgUGg-- -3'
miRNA:   3'- aGCG-GCUCUGGUcGUCGAAGaGCaag -5'
28730 5' -55 NC_006146.1 + 41850 0.66 0.943096
Target:  5'- -gGCCGuGGCCAGgGGCUaccggggcCUCGUg- -3'
miRNA:   3'- agCGGCuCUGGUCgUCGAa-------GAGCAag -5'
28730 5' -55 NC_006146.1 + 48758 0.66 0.938422
Target:  5'- gCGCCcGGccuCCAGCAGCcgccgcagcuucUUCUCGUa- -3'
miRNA:   3'- aGCGGcUCu--GGUCGUCG------------AAGAGCAag -5'
28730 5' -55 NC_006146.1 + 56870 0.66 0.933508
Target:  5'- -gGCUGGGGCUGGCGGCccccgUGUUCg -3'
miRNA:   3'- agCGGCUCUGGUCGUCGaaga-GCAAG- -5'
28730 5' -55 NC_006146.1 + 58851 0.66 0.933508
Target:  5'- gCGCCGucaAGGCCGGCAGCccCUUcaUCc -3'
miRNA:   3'- aGCGGC---UCUGGUCGUCGaaGAGcaAG- -5'
28730 5' -55 NC_006146.1 + 159326 0.66 0.933508
Target:  5'- -aGuuGAGGCUGGcCGGCgUCUCGUg- -3'
miRNA:   3'- agCggCUCUGGUC-GUCGaAGAGCAag -5'
28730 5' -55 NC_006146.1 + 84173 0.67 0.922958
Target:  5'- -gGCCGAGaauGCCGGUAGCgaugCUUGcUCc -3'
miRNA:   3'- agCGGCUC---UGGUCGUCGaa--GAGCaAG- -5'
28730 5' -55 NC_006146.1 + 11844 0.67 0.922958
Target:  5'- gCGCCGGGcCCu---GCUUCUCGggCu -3'
miRNA:   3'- aGCGGCUCuGGucguCGAAGAGCaaG- -5'
28730 5' -55 NC_006146.1 + 49720 0.67 0.917322
Target:  5'- -aGUCG-GGCCAGgAGCUgguugauuUCUCGUUUc -3'
miRNA:   3'- agCGGCuCUGGUCgUCGA--------AGAGCAAG- -5'
28730 5' -55 NC_006146.1 + 150186 0.67 0.917321
Target:  5'- cUCGCa-GGccGCCAGCAGCUUCUUa--- -3'
miRNA:   3'- -AGCGgcUC--UGGUCGUCGAAGAGcaag -5'
28730 5' -55 NC_006146.1 + 38674 0.67 0.89898
Target:  5'- gCGCUGcuugaaaaauGGcaACCGGCAGCUUCUC-UUCc -3'
miRNA:   3'- aGCGGC----------UC--UGGUCGUCGAAGAGcAAG- -5'
28730 5' -55 NC_006146.1 + 115187 0.68 0.892396
Target:  5'- aCGCgGAGGCCAGCGGCgggCa----- -3'
miRNA:   3'- aGCGgCUCUGGUCGUCGaa-Gagcaag -5'
28730 5' -55 NC_006146.1 + 115685 0.68 0.892395
Target:  5'- -aGCUGAGACCGGUgucgauggaGGCcaUCUCGUg- -3'
miRNA:   3'- agCGGCUCUGGUCG---------UCGa-AGAGCAag -5'
28730 5' -55 NC_006146.1 + 126027 0.68 0.885581
Target:  5'- aUCG-CGAGcCCAGgGGCUUCUCa--- -3'
miRNA:   3'- -AGCgGCUCuGGUCgUCGAAGAGcaag -5'
28730 5' -55 NC_006146.1 + 45047 0.68 0.878541
Target:  5'- -gGCCGGGGCCggcucccuaggGGCGGCUgaggugcCUCGUg- -3'
miRNA:   3'- agCGGCUCUGG-----------UCGUCGAa------GAGCAag -5'
28730 5' -55 NC_006146.1 + 141011 0.68 0.871279
Target:  5'- gCGCCGGuGACCugauAGCAGCggUCUCa--- -3'
miRNA:   3'- aGCGGCU-CUGG----UCGUCGa-AGAGcaag -5'
28730 5' -55 NC_006146.1 + 66568 0.68 0.863802
Target:  5'- cCGCCaaGGGCCGGCAGCUguaUCGc-- -3'
miRNA:   3'- aGCGGc-UCUGGUCGUCGAag-AGCaag -5'
28730 5' -55 NC_006146.1 + 47001 0.68 0.863802
Target:  5'- cCGUCG-GACCGGCAGCggCcCGgUCg -3'
miRNA:   3'- aGCGGCuCUGGUCGUCGaaGaGCaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.