Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28730 | 5' | -55 | NC_006146.1 | + | 167029 | 1.11 | 0.00297 |
Target: 5'- cUCGCCGAGACCAGCAGCUUCUCGUUCa -3' miRNA: 3'- -AGCGGCUCUGGUCGUCGAAGAGCAAG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 158594 | 0.78 | 0.381066 |
Target: 5'- -aGCCGAGAcagccgcuCCAGCAGgUUCUgGUUCa -3' miRNA: 3'- agCGGCUCU--------GGUCGUCgAAGAgCAAG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 114300 | 0.75 | 0.527665 |
Target: 5'- aCGCCggcgagGAGACCGGCGGCgggCUCGg-- -3' miRNA: 3'- aGCGG------CUCUGGUCGUCGaa-GAGCaag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 147462 | 0.72 | 0.659868 |
Target: 5'- -gGCCGAGACgGGCAGCcggagCUUGUg- -3' miRNA: 3'- agCGGCUCUGgUCGUCGaa---GAGCAag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 67890 | 0.71 | 0.720617 |
Target: 5'- -gGCCGAGACCAGCAcgaaCUgggcCUCGUg- -3' miRNA: 3'- agCGGCUCUGGUCGUc---GAa---GAGCAag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 12020 | 0.71 | 0.730528 |
Target: 5'- gUGcCCGAGACCGGCAGCUaCguggCGg-- -3' miRNA: 3'- aGC-GGCUCUGGUCGUCGAaGa---GCaag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 13808 | 0.7 | 0.759708 |
Target: 5'- aCGCCGAGuACUuauugGGCcGCUUCUCGg-- -3' miRNA: 3'- aGCGGCUC-UGG-----UCGuCGAAGAGCaag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 67687 | 0.7 | 0.787863 |
Target: 5'- cUCGCgCGAGuCCcgccGCAGCUUUUCGcgCg -3' miRNA: 3'- -AGCG-GCUCuGGu---CGUCGAAGAGCaaG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 64649 | 0.7 | 0.759707 |
Target: 5'- cCGCCGGGGCCAGgGGCacgUCgcCGUg- -3' miRNA: 3'- aGCGGCUCUGGUCgUCGa--AGa-GCAag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 10748 | 0.7 | 0.805943 |
Target: 5'- -aGCCGGGGCCAuGCGGCUacaUCUacUUCu -3' miRNA: 3'- agCGGCUCUGGU-CGUCGA---AGAgcAAG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 100028 | 0.69 | 0.823387 |
Target: 5'- gCGgCGGGGuCC-GCGGCUUCUCGcggUCg -3' miRNA: 3'- aGCgGCUCU-GGuCGUCGAAGAGCa--AG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 66568 | 0.68 | 0.863802 |
Target: 5'- cCGCCaaGGGCCGGCAGCUguaUCGc-- -3' miRNA: 3'- aGCGGc-UCUGGUCGUCGAag-AGCaag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 141011 | 0.68 | 0.871279 |
Target: 5'- gCGCCGGuGACCugauAGCAGCggUCUCa--- -3' miRNA: 3'- aGCGGCU-CUGG----UCGUCGa-AGAGcaag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 45047 | 0.68 | 0.878541 |
Target: 5'- -gGCCGGGGCCggcucccuaggGGCGGCUgaggugcCUCGUg- -3' miRNA: 3'- agCGGCUCUGG-----------UCGUCGAa------GAGCAag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 115685 | 0.68 | 0.892395 |
Target: 5'- -aGCUGAGACCGGUgucgauggaGGCcaUCUCGUg- -3' miRNA: 3'- agCGGCUCUGGUCG---------UCGa-AGAGCAag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 47001 | 0.68 | 0.863802 |
Target: 5'- cCGUCG-GACCGGCAGCggCcCGgUCg -3' miRNA: 3'- aGCGGCuCUGGUCGUCGaaGaGCaAG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 115187 | 0.68 | 0.892396 |
Target: 5'- aCGCgGAGGCCAGCGGCgggCa----- -3' miRNA: 3'- aGCGgCUCUGGUCGUCGaa-Gagcaag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 126027 | 0.68 | 0.885581 |
Target: 5'- aUCG-CGAGcCCAGgGGCUUCUCa--- -3' miRNA: 3'- -AGCgGCUCuGGUCgUCGAAGAGcaag -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 49720 | 0.67 | 0.917322 |
Target: 5'- -aGUCG-GGCCAGgAGCUgguugauuUCUCGUUUc -3' miRNA: 3'- agCGGCuCUGGUCgUCGA--------AGAGCAAG- -5' |
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28730 | 5' | -55 | NC_006146.1 | + | 38674 | 0.67 | 0.89898 |
Target: 5'- gCGCUGcuugaaaaauGGcaACCGGCAGCUUCUC-UUCc -3' miRNA: 3'- aGCGGC----------UC--UGGUCGUCGAAGAGcAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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