miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 3' -59.3 NC_006146.1 + 61605 0.68 0.695907
Target:  5'- gCGGCcgcgGCCGGgGCCGAGAUcccUC-CCa -3'
miRNA:   3'- -GCCGa---CGGCCgUGGCUCUAcc-AGuGG- -5'
28732 3' -59.3 NC_006146.1 + 68812 0.66 0.823282
Target:  5'- uGGCcGUgagCGGCAUCGAGAUGGaCGa- -3'
miRNA:   3'- gCCGaCG---GCCGUGGCUCUACCaGUgg -5'
28732 3' -59.3 NC_006146.1 + 71894 0.66 0.814983
Target:  5'- gGGCUGgUGGCGuuaGGGGUGGUggaCACUg -3'
miRNA:   3'- gCCGACgGCCGUgg-CUCUACCA---GUGG- -5'
28732 3' -59.3 NC_006146.1 + 71930 0.66 0.814983
Target:  5'- gGGCUGgUGGCGuuaGGGGUGGUggaCACUg -3'
miRNA:   3'- gCCGACgGCCGUgg-CUCUACCA---GUGG- -5'
28732 3' -59.3 NC_006146.1 + 72367 0.66 0.797063
Target:  5'- cCGGCUGgCGGCGacgaaacCCGAGucggGUGGg-GCCc -3'
miRNA:   3'- -GCCGACgGCCGU-------GGCUC----UACCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 74861 0.67 0.762217
Target:  5'- gGGCUucuugacgGCCGGCACCaugccGGUGG-CACa -3'
miRNA:   3'- gCCGA--------CGGCCGUGGcu---CUACCaGUGg -5'
28732 3' -59.3 NC_006146.1 + 76927 0.67 0.743684
Target:  5'- gGGCUGCagccgGGUgaacuGCCGcuGGA-GGUCGCCu -3'
miRNA:   3'- gCCGACGg----CCG-----UGGC--UCUaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 77924 0.67 0.734277
Target:  5'- gGGCgGCCucgcaGGUGCCGGG--GGUCGCUg -3'
miRNA:   3'- gCCGaCGG-----CCGUGGCUCuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 79089 0.67 0.734277
Target:  5'- aCGGCUGCCaacuuGCGCUGgaAGAUGGggcugagCugCa -3'
miRNA:   3'- -GCCGACGGc----CGUGGC--UCUACCa------GugG- -5'
28732 3' -59.3 NC_006146.1 + 85529 0.67 0.734277
Target:  5'- cCGGCUuCUGGCgucuccACCGGGcaucUGGUCACa -3'
miRNA:   3'- -GCCGAcGGCCG------UGGCUCu---ACCAGUGg -5'
28732 3' -59.3 NC_006146.1 + 85606 0.66 0.797931
Target:  5'- uCGGaaGCUGGCACCGGGGcaaaGG--GCCa -3'
miRNA:   3'- -GCCgaCGGCCGUGGCUCUa---CCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 89104 0.67 0.743684
Target:  5'- -uGCUaCCGGCACUGccccAGGUGG-CACCc -3'
miRNA:   3'- gcCGAcGGCCGUGGC----UCUACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 92442 0.7 0.577979
Target:  5'- uGGagaCUGUagCGGCGCCGGGAUGGcCAUg -3'
miRNA:   3'- gCC---GACG--GCCGUGGCUCUACCaGUGg -5'
28732 3' -59.3 NC_006146.1 + 93282 0.67 0.771327
Target:  5'- gGGUUGCCcuCGCCGG--UGGUCAUCu -3'
miRNA:   3'- gCCGACGGccGUGGCUcuACCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 98866 0.68 0.715224
Target:  5'- gGGgUGCCuGCGCCGA----GUCACCa -3'
miRNA:   3'- gCCgACGGcCGUGGCUcuacCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 100701 0.67 0.731438
Target:  5'- uCGGCacCCGGCGCUgcgGGGGUGGgugugggaccggccUCGCCg -3'
miRNA:   3'- -GCCGacGGCCGUGG---CUCUACC--------------AGUGG- -5'
28732 3' -59.3 NC_006146.1 + 105651 0.68 0.724788
Target:  5'- uGGCaagcGCCGGCGucguucaCGGGAagcgaGGUCACCu -3'
miRNA:   3'- gCCGa---CGGCCGUg------GCUCUa----CCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 106470 0.67 0.743684
Target:  5'- aGGCUGUcuCGGCGCCGAGAccccaaguaucaUGuG-CACg -3'
miRNA:   3'- gCCGACG--GCCGUGGCUCU------------AC-CaGUGg -5'
28732 3' -59.3 NC_006146.1 + 112055 0.67 0.762217
Target:  5'- gGGCUGCCGGCcuugacggcgcaGuuGAcGAUGGagaaCAUCa -3'
miRNA:   3'- gCCGACGGCCG------------UggCU-CUACCa---GUGG- -5'
28732 3' -59.3 NC_006146.1 + 112405 0.72 0.464846
Target:  5'- gGGCUGCCGuGC-CUGuGGAU-GUCACCa -3'
miRNA:   3'- gCCGACGGC-CGuGGC-UCUAcCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.