miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 3' -59.3 NC_006146.1 + 44069 0.76 0.305508
Target:  5'- gGGCgccugcaUGCCGGgACUGGGGUGGUucCACCu -3'
miRNA:   3'- gCCG-------ACGGCCgUGGCUCUACCA--GUGG- -5'
28732 3' -59.3 NC_006146.1 + 44198 0.69 0.617279
Target:  5'- gCGGCUGCaCuGCAgCCGGGGgcggugccuUGGUgACCg -3'
miRNA:   3'- -GCCGACG-GcCGU-GGCUCU---------ACCAgUGG- -5'
28732 3' -59.3 NC_006146.1 + 45114 0.67 0.743684
Target:  5'- cCGGCUcgGCCGGUgaccGCCGGGAgccuugGGcUUugCg -3'
miRNA:   3'- -GCCGA--CGGCCG----UGGCUCUa-----CC-AGugG- -5'
28732 3' -59.3 NC_006146.1 + 47024 0.67 0.768606
Target:  5'- uCGGaCUcGCgGGCGCCcugggugcgagaagGGGccGGUCGCCg -3'
miRNA:   3'- -GCC-GA-CGgCCGUGG--------------CUCuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 47185 0.68 0.705594
Target:  5'- uGGCUGUCGGgAgcCCGAGcUGGaCACg -3'
miRNA:   3'- gCCGACGGCCgU--GGCUCuACCaGUGg -5'
28732 3' -59.3 NC_006146.1 + 51908 0.66 0.814983
Target:  5'- uCGGCggggGCCuccgaGGCACCGAcgggcggccccGGUgcGGUCugCg -3'
miRNA:   3'- -GCCGa---CGG-----CCGUGGCU-----------CUA--CCAGugG- -5'
28732 3' -59.3 NC_006146.1 + 52672 0.72 0.501443
Target:  5'- aCGuGCgcaGCCGcCucuCCGAGAUGGUCGCUg -3'
miRNA:   3'- -GC-CGa--CGGCcGu--GGCUCUACCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 52991 0.68 0.695907
Target:  5'- gCGGacCUGCCGGCcgugGCCGcGggGGUCgaugACCa -3'
miRNA:   3'- -GCC--GACGGCCG----UGGCuCuaCCAG----UGG- -5'
28732 3' -59.3 NC_006146.1 + 53029 0.66 0.791828
Target:  5'- gCGGCUggccgcgGCCGcCGCCGAGAgguaaggggggcgggUGGggaaCACCg -3'
miRNA:   3'- -GCCGA-------CGGCcGUGGCUCU---------------ACCa---GUGG- -5'
28732 3' -59.3 NC_006146.1 + 53115 0.67 0.762217
Target:  5'- aGGCgGcCCGGC-CCGGGGgagcgcgacGGUUGCCu -3'
miRNA:   3'- gCCGaC-GGCCGuGGCUCUa--------CCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 53617 0.72 0.464846
Target:  5'- gCGGCaccggGCCGuGCACCGAcuGAUGGUggggaACCu -3'
miRNA:   3'- -GCCGa----CGGC-CGUGGCU--CUACCAg----UGG- -5'
28732 3' -59.3 NC_006146.1 + 54000 0.78 0.211763
Target:  5'- cCGGCUuucccucaggGCCGGCACC-AGGUGG-CGCCu -3'
miRNA:   3'- -GCCGA----------CGGCCGUGGcUCUACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 54714 0.67 0.780321
Target:  5'- aCGGCggGCCcgggucagGGCgGCCGAGGggagacucaGGUCGCUg -3'
miRNA:   3'- -GCCGa-CGG--------CCG-UGGCUCUa--------CCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 54893 0.7 0.596599
Target:  5'- cCGGCcggaggagcucuuUGCUGaGUACCGGGAgUGG-CACCg -3'
miRNA:   3'- -GCCG-------------ACGGC-CGUGGCUCU-ACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 56584 0.7 0.577979
Target:  5'- gGGCgGCCgGGCGCCGAGcccGcCGCCg -3'
miRNA:   3'- gCCGaCGG-CCGUGGCUCuacCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 57199 0.68 0.68617
Target:  5'- cCGGCUGCCGcCGCCGuccccgGGccGGagGCCg -3'
miRNA:   3'- -GCCGACGGCcGUGGC------UCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 57928 0.76 0.292151
Target:  5'- gGGCgcugGCCGGCGCCGccAUGGugcugcaUCACCa -3'
miRNA:   3'- gCCGa---CGGCCGUGGCucUACC-------AGUGG- -5'
28732 3' -59.3 NC_006146.1 + 58967 0.66 0.823282
Target:  5'- -uGCgGCCGGUAUaauGAUGGcCACCa -3'
miRNA:   3'- gcCGaCGGCCGUGgcuCUACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 59691 0.66 0.806531
Target:  5'- gCGGCaaUGCCGGUGCCGgAGGcggagguguuguUGGUguagGCCg -3'
miRNA:   3'- -GCCG--ACGGCCGUGGC-UCU------------ACCAg---UGG- -5'
28732 3' -59.3 NC_006146.1 + 61226 0.73 0.412706
Target:  5'- uCGGgUaCCGGaCugCGAGGUGGUCugCu -3'
miRNA:   3'- -GCCgAcGGCC-GugGCUCUACCAGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.