miRNA display CGI


Results 21 - 40 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 3' -59.3 NC_006146.1 + 10533 0.66 0.806531
Target:  5'- gCGGcCUGCCaagGGCGCUGAGA----CGCCa -3'
miRNA:   3'- -GCC-GACGG---CCGUGGCUCUaccaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 59691 0.66 0.806531
Target:  5'- gCGGCaaUGCCGGUGCCGgAGGcggagguguuguUGGUguagGCCg -3'
miRNA:   3'- -GCCG--ACGGCCGUGGC-UCU------------ACCAg---UGG- -5'
28732 3' -59.3 NC_006146.1 + 137690 0.66 0.806531
Target:  5'- cCGGCUGCCccggaGCACCaGGAgcacccGGagGCCa -3'
miRNA:   3'- -GCCGACGGc----CGUGGcUCUa-----CCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 126588 0.66 0.814145
Target:  5'- cCGGCUGCCacGGCcccagcccccacuACCGGuuuggcGGUGGUCGgUg -3'
miRNA:   3'- -GCCGACGG--CCG-------------UGGCU------CUACCAGUgG- -5'
28732 3' -59.3 NC_006146.1 + 43628 0.66 0.823282
Target:  5'- aGGgaGUgGGCGgCGGGGcgUGGcCGCCu -3'
miRNA:   3'- gCCgaCGgCCGUgGCUCU--ACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 114285 0.66 0.823282
Target:  5'- uGGCUGCCacuauGGaCGCCGGcGA-GGagACCg -3'
miRNA:   3'- gCCGACGG-----CC-GUGGCU-CUaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 58967 0.66 0.823282
Target:  5'- -uGCgGCCGGUAUaauGAUGGcCACCa -3'
miRNA:   3'- gcCGaCGGCCGUGgcuCUACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 150875 0.66 0.797931
Target:  5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3'
miRNA:   3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 147797 0.66 0.797931
Target:  5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3'
miRNA:   3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 144719 0.66 0.797931
Target:  5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3'
miRNA:   3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 141642 0.66 0.797931
Target:  5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3'
miRNA:   3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 72367 0.66 0.797063
Target:  5'- cCGGCUGgCGGCGacgaaacCCGAGucggGUGGg-GCCc -3'
miRNA:   3'- -GCCGACgGCCGU-------GGCUC----UACCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 33019 0.66 0.805677
Target:  5'- aCGGggaccccCUGCCGGC-CCGGGgcGGg-GCCc -3'
miRNA:   3'- -GCC-------GACGGCCGuGGCUCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 79089 0.67 0.734277
Target:  5'- aCGGCUGCCaacuuGCGCUGgaAGAUGGggcugagCugCa -3'
miRNA:   3'- -GCCGACGGc----CGUGGC--UCUACCa------GugG- -5'
28732 3' -59.3 NC_006146.1 + 76927 0.67 0.743684
Target:  5'- gGGCUGCagccgGGUgaacuGCCGcuGGA-GGUCGCCu -3'
miRNA:   3'- gCCGACGg----CCG-----UGGC--UCUaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 132656 0.67 0.753
Target:  5'- aGGCacacaCGGCGCCGAGAcgGGUC-Ca -3'
miRNA:   3'- gCCGacg--GCCGUGGCUCUa-CCAGuGg -5'
28732 3' -59.3 NC_006146.1 + 120765 0.67 0.758543
Target:  5'- aGcGCUGgCGGCGCCucaugucccuggcGGA-GGUCGCCg -3'
miRNA:   3'- gC-CGACgGCCGUGGc------------UCUaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 74861 0.67 0.762217
Target:  5'- gGGCUucuugacgGCCGGCACCaugccGGUGG-CACa -3'
miRNA:   3'- gCCGA--------CGGCCGUGGcu---CUACCaGUGg -5'
28732 3' -59.3 NC_006146.1 + 112055 0.67 0.762217
Target:  5'- gGGCUGCCGGCcuugacggcgcaGuuGAcGAUGGagaaCAUCa -3'
miRNA:   3'- gCCGACGGCCG------------UggCU-CUACCa---GUGG- -5'
28732 3' -59.3 NC_006146.1 + 117022 0.67 0.762217
Target:  5'- gGGCUacGCCcuaacgggGGCGCUGAGGgccaGcGUCGCCu -3'
miRNA:   3'- gCCGA--CGG--------CCGUGGCUCUa---C-CAGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.