miRNA display CGI


Results 21 - 40 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 3' -59.3 NC_006146.1 + 167364 0.68 0.676391
Target:  5'- gCGGCggcGCCGGCcggggGCUGAGggGGcUC-CCg -3'
miRNA:   3'- -GCCGa--CGGCCG-----UGGCUCuaCC-AGuGG- -5'
28732 3' -59.3 NC_006146.1 + 44198 0.69 0.617279
Target:  5'- gCGGCUGCaCuGCAgCCGGGGgcggugccuUGGUgACCg -3'
miRNA:   3'- -GCCGACG-GcCGU-GGCUCU---------ACCAgUGG- -5'
28732 3' -59.3 NC_006146.1 + 18992 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 170091 0.75 0.334337
Target:  5'- cCGGCgggagggGCCGGCGCCGcAGggGGg-GCCg -3'
miRNA:   3'- -GCCGa------CGGCCGUGGC-UCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 33228 0.68 0.724788
Target:  5'- gGGCaGCCGGguggcCGCCG-GcgGGUcCGCCg -3'
miRNA:   3'- gCCGaCGGCC-----GUGGCuCuaCCA-GUGG- -5'
28732 3' -59.3 NC_006146.1 + 167295 0.68 0.676391
Target:  5'- cCGGCgggagggGCCGGCGCCuGcAGggGGg-GCCg -3'
miRNA:   3'- -GCCGa------CGGCCGUGG-C-UCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 56584 0.7 0.577979
Target:  5'- gGGCgGCCgGGCGCCGAGcccGcCGCCg -3'
miRNA:   3'- gCCGaCGG-CCGUGGCUCuacCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 117874 0.75 0.334337
Target:  5'- gCGGCUGagaugGGCAcCCGAGGcUGGUCAUCg -3'
miRNA:   3'- -GCCGACgg---CCGU-GGCUCU-ACCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 159895 0.68 0.676391
Target:  5'- gGGCcucgagGCCGGgGCCcucgaAGAUGGggggCACCa -3'
miRNA:   3'- gCCGa-----CGGCCgUGGc----UCUACCa---GUGG- -5'
28732 3' -59.3 NC_006146.1 + 44069 0.76 0.305508
Target:  5'- gGGCgccugcaUGCCGGgACUGGGGUGGUucCACCu -3'
miRNA:   3'- gCCG-------ACGGCCgUGGCUCUACCA--GUGG- -5'
28732 3' -59.3 NC_006146.1 + 92442 0.7 0.577979
Target:  5'- uGGagaCUGUagCGGCGCCGGGAUGGcCAUg -3'
miRNA:   3'- gCC---GACG--GCCGUGGCUCUACCaGUGg -5'
28732 3' -59.3 NC_006146.1 + 168296 0.68 0.676391
Target:  5'- gCGGCggcGCCGGCcggggGCUGAGggGGcUC-CCg -3'
miRNA:   3'- -GCCGa--CGGCCG-----UGGCUCuaCC-AGuGG- -5'
28732 3' -59.3 NC_006146.1 + 114158 0.71 0.510792
Target:  5'- aGGCgcaUGCUGGCcCUGGGcagcagGGUCACCa -3'
miRNA:   3'- gCCG---ACGGCCGuGGCUCua----CCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 22070 0.72 0.482978
Target:  5'- cCGGCgGCCGGaC-CCGAGGaGG-CGCCu -3'
miRNA:   3'- -GCCGaCGGCC-GuGGCUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 154662 0.72 0.465744
Target:  5'- cCGGCUGCaccgugguggcggggGGCGCUGcugcuGGGUGGUCugCg -3'
miRNA:   3'- -GCCGACGg--------------CCGUGGC-----UCUACCAGugG- -5'
28732 3' -59.3 NC_006146.1 + 152270 0.74 0.362022
Target:  5'- uGGCUGCCuggagugcucugcuGGcCACCGaAGGuuUGGUCGCCc -3'
miRNA:   3'- gCCGACGG--------------CC-GUGGC-UCU--ACCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 106470 0.67 0.743684
Target:  5'- aGGCUGUcuCGGCGCCGAGAccccaaguaucaUGuG-CACg -3'
miRNA:   3'- gCCGACG--GCCGUGGCUCU------------AC-CaGUGg -5'
28732 3' -59.3 NC_006146.1 + 125439 0.67 0.734277
Target:  5'- uGGCU-CUGGCACUacGAUGGUCAg- -3'
miRNA:   3'- gCCGAcGGCCGUGGcuCUACCAGUgg -5'
28732 3' -59.3 NC_006146.1 + 98866 0.68 0.715224
Target:  5'- gGGgUGCCuGCGCCGA----GUCACCa -3'
miRNA:   3'- gCCgACGGcCGUGGCUcuacCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 168227 0.68 0.676391
Target:  5'- cCGGCgggagggGCCGGCGCCuGcAGggGGg-GCCg -3'
miRNA:   3'- -GCCGa------CGGCCGUGG-C-UCuaCCagUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.