miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 3' -59.3 NC_006146.1 + 114158 0.71 0.510792
Target:  5'- aGGCgcaUGCUGGCcCUGGGcagcagGGUCACCa -3'
miRNA:   3'- gCCG---ACGGCCGuGGCUCua----CCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 43525 0.71 0.5297
Target:  5'- aGGCUGCCGGcCACCaucAGuggGGUguCCg -3'
miRNA:   3'- gCCGACGGCC-GUGGc--UCua-CCAguGG- -5'
28732 3' -59.3 NC_006146.1 + 126800 0.71 0.539251
Target:  5'- uCGGCgccgagcGCgCGGC-CCGAGGUGGaacCACCc -3'
miRNA:   3'- -GCCGa------CG-GCCGuGGCUCUACCa--GUGG- -5'
28732 3' -59.3 NC_006146.1 + 21356 0.71 0.548859
Target:  5'- gGGCUGCCGGCGggcuuCCu-GccGGUCAUCg -3'
miRNA:   3'- gCCGACGGCCGU-----GGcuCuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 147557 0.7 0.568229
Target:  5'- -cGC-GCCaGGCGCUGAGGUcGGUCugCa -3'
miRNA:   3'- gcCGaCGG-CCGUGGCUCUA-CCAGugG- -5'
28732 3' -59.3 NC_006146.1 + 148536 0.7 0.577002
Target:  5'- -uGCUGCUGGcCACUGccaugauGGGUGGUgGCCg -3'
miRNA:   3'- gcCGACGGCC-GUGGC-------UCUACCAgUGG- -5'
28732 3' -59.3 NC_006146.1 + 92442 0.7 0.577979
Target:  5'- uGGagaCUGUagCGGCGCCGGGAUGGcCAUg -3'
miRNA:   3'- gCC---GACG--GCCGUGGCUCUACCaGUGg -5'
28732 3' -59.3 NC_006146.1 + 56584 0.7 0.577979
Target:  5'- gGGCgGCCgGGCGCCGAGcccGcCGCCg -3'
miRNA:   3'- gCCGaCGG-CCGUGGCUCuacCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 54893 0.7 0.596599
Target:  5'- cCGGCcggaggagcucuuUGCUGaGUACCGGGAgUGG-CACCg -3'
miRNA:   3'- -GCCG-------------ACGGC-CGUGGCUCU-ACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 44198 0.69 0.617279
Target:  5'- gCGGCUGCaCuGCAgCCGGGGgcggugccuUGGUgACCg -3'
miRNA:   3'- -GCCGACG-GcCGU-GGCUCU---------ACCAgUGG- -5'
28732 3' -59.3 NC_006146.1 + 24116 0.69 0.627146
Target:  5'- gGGCgGCUGGCACCGGGccuguaccuGUCGCg -3'
miRNA:   3'- gCCGaCGGCCGUGGCUCuac------CAGUGg -5'
28732 3' -59.3 NC_006146.1 + 12413 0.69 0.627146
Target:  5'- gCGGC-GgUGGaCGCCGAGGUGGUC-Ca -3'
miRNA:   3'- -GCCGaCgGCC-GUGGCUCUACCAGuGg -5'
28732 3' -59.3 NC_006146.1 + 33338 0.69 0.666579
Target:  5'- cCGGgUGCUccggGGCAgCCG-GGUGGcCGCCg -3'
miRNA:   3'- -GCCgACGG----CCGU-GGCuCUACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 41515 0.69 0.666579
Target:  5'- aGGCUuCCGGCcCCaGAGGaGGcCGCCg -3'
miRNA:   3'- gCCGAcGGCCGuGG-CUCUaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 114116 0.68 0.676391
Target:  5'- aCGGCcGCCGcGCucACCGAGGaGGcCugCg -3'
miRNA:   3'- -GCCGaCGGC-CG--UGGCUCUaCCaGugG- -5'
28732 3' -59.3 NC_006146.1 + 167364 0.68 0.676391
Target:  5'- gCGGCggcGCCGGCcggggGCUGAGggGGcUC-CCg -3'
miRNA:   3'- -GCCGa--CGGCCG-----UGGCUCuaCC-AGuGG- -5'
28732 3' -59.3 NC_006146.1 + 168296 0.68 0.676391
Target:  5'- gCGGCggcGCCGGCcggggGCUGAGggGGcUC-CCg -3'
miRNA:   3'- -GCCGa--CGGCCG-----UGGCUCuaCC-AGuGG- -5'
28732 3' -59.3 NC_006146.1 + 169228 0.68 0.676391
Target:  5'- gCGGCggcGCCGGCcggggGCUGAGggGGcUC-CCg -3'
miRNA:   3'- -GCCGa--CGGCCG-----UGGCUCuaCC-AGuGG- -5'
28732 3' -59.3 NC_006146.1 + 170159 0.68 0.676391
Target:  5'- gCGGCggcGCCGGCcggggGCUGAGggGGcUC-CCg -3'
miRNA:   3'- -GCCGa--CGGCCG-----UGGCUCuaCC-AGuGG- -5'
28732 3' -59.3 NC_006146.1 + 159895 0.68 0.676391
Target:  5'- gGGCcucgagGCCGGgGCCcucgaAGAUGGggggCACCa -3'
miRNA:   3'- gCCGa-----CGGCCgUGGc----UCUACCa---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.