miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 3' -59.3 NC_006146.1 + 168227 0.68 0.676391
Target:  5'- cCGGCgggagggGCCGGCGCCuGcAGggGGg-GCCg -3'
miRNA:   3'- -GCCGa------CGGCCGUGG-C-UCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 169159 0.68 0.676391
Target:  5'- cCGGCgggagggGCCGGCGCCuGcAGggGGg-GCCg -3'
miRNA:   3'- -GCCGa------CGGCCGUGG-C-UCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 167295 0.68 0.676391
Target:  5'- cCGGCgggagggGCCGGCGCCuGcAGggGGg-GCCg -3'
miRNA:   3'- -GCCGa------CGGCCGUGG-C-UCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 57199 0.68 0.68617
Target:  5'- cCGGCUGCCGcCGCCGuccccgGGccGGagGCCg -3'
miRNA:   3'- -GCCGACGGCcGUGGC------UCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 61605 0.68 0.695907
Target:  5'- gCGGCcgcgGCCGGgGCCGAGAUcccUC-CCa -3'
miRNA:   3'- -GCCGa---CGGCCgUGGCUCUAcc-AGuGG- -5'
28732 3' -59.3 NC_006146.1 + 52991 0.68 0.695907
Target:  5'- gCGGacCUGCCGGCcgugGCCGcGggGGUCgaugACCa -3'
miRNA:   3'- -GCC--GACGGCCG----UGGCuCuaCCAG----UGG- -5'
28732 3' -59.3 NC_006146.1 + 127657 0.68 0.695907
Target:  5'- aGGCcgcGCUGGCGCCGAGGcaccccaaaGGUcCGCUg -3'
miRNA:   3'- gCCGa--CGGCCGUGGCUCUa--------CCA-GUGG- -5'
28732 3' -59.3 NC_006146.1 + 161754 0.68 0.695907
Target:  5'- uGGCgGCUGaGguCCGAGggGG-CGCCu -3'
miRNA:   3'- gCCGaCGGC-CguGGCUCuaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 113030 0.68 0.704628
Target:  5'- cCGGCUGUCGGCACCGGuaauguuGAauGUCcuuuuCCu -3'
miRNA:   3'- -GCCGACGGCCGUGGCU-------CUacCAGu----GG- -5'
28732 3' -59.3 NC_006146.1 + 47185 0.68 0.705594
Target:  5'- uGGCUGUCGGgAgcCCGAGcUGGaCACg -3'
miRNA:   3'- gCCGACGGCCgU--GGCUCuACCaGUGg -5'
28732 3' -59.3 NC_006146.1 + 162232 0.68 0.715224
Target:  5'- gGGCUagGCUGGUguACC-AGGUGGUCAUUc -3'
miRNA:   3'- gCCGA--CGGCCG--UGGcUCUACCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 139464 0.68 0.715224
Target:  5'- gGGgUGCCuGCACUGgAGAaGGUCuCCa -3'
miRNA:   3'- gCCgACGGcCGUGGC-UCUaCCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 98866 0.68 0.715224
Target:  5'- gGGgUGCCuGCGCCGA----GUCACCa -3'
miRNA:   3'- gCCgACGGcCGUGGCUcuacCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 120209 0.68 0.723834
Target:  5'- aGGcCUGCCGGUcggugccugugggGCCGGGGUuucGUCugCu -3'
miRNA:   3'- gCC-GACGGCCG-------------UGGCUCUAc--CAGugG- -5'
28732 3' -59.3 NC_006146.1 + 105651 0.68 0.724788
Target:  5'- uGGCaagcGCCGGCGucguucaCGGGAagcgaGGUCACCu -3'
miRNA:   3'- gCCGa---CGGCCGUg------GCUCUa----CCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 33228 0.68 0.724788
Target:  5'- gGGCaGCCGGguggcCGCCG-GcgGGUcCGCCg -3'
miRNA:   3'- gCCGaCGGCC-----GUGGCuCuaCCA-GUGG- -5'
28732 3' -59.3 NC_006146.1 + 33104 0.68 0.724788
Target:  5'- gGGCaGCCGGguggcCGCCG-GcgGGUuCGCCg -3'
miRNA:   3'- gCCGaCGGCC-----GUGGCuCuaCCA-GUGG- -5'
28732 3' -59.3 NC_006146.1 + 100701 0.67 0.731438
Target:  5'- uCGGCacCCGGCGCUgcgGGGGUGGgugugggaccggccUCGCCg -3'
miRNA:   3'- -GCCGacGGCCGUGG---CUCUACC--------------AGUGG- -5'
28732 3' -59.3 NC_006146.1 + 77924 0.67 0.734277
Target:  5'- gGGCgGCCucgcaGGUGCCGGG--GGUCGCUg -3'
miRNA:   3'- gCCGaCGG-----CCGUGGCUCuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 79089 0.67 0.734277
Target:  5'- aCGGCUGCCaacuuGCGCUGgaAGAUGGggcugagCugCa -3'
miRNA:   3'- -GCCGACGGc----CGUGGC--UCUACCa------GugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.