miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 3' -59.3 NC_006146.1 + 153694 0.67 0.771327
Target:  5'- uGGUaaGCCaGGC-CCGAG--GGUCACCu -3'
miRNA:   3'- gCCGa-CGG-CCGuGGCUCuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 150617 0.67 0.771327
Target:  5'- uGGUaaGCCaGGC-CCGAG--GGUCACCu -3'
miRNA:   3'- gCCGa-CGG-CCGuGGCUCuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 166019 0.67 0.770421
Target:  5'- gCGGUUGUgGGCAUCGGGGgugccugUGGccccCGCCc -3'
miRNA:   3'- -GCCGACGgCCGUGGCUCU-------ACCa---GUGG- -5'
28732 3' -59.3 NC_006146.1 + 47024 0.67 0.768606
Target:  5'- uCGGaCUcGCgGGCGCCcugggugcgagaagGGGccGGUCGCCg -3'
miRNA:   3'- -GCC-GA-CGgCCGUGG--------------CUCuaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 53115 0.67 0.762217
Target:  5'- aGGCgGcCCGGC-CCGGGGgagcgcgacGGUUGCCu -3'
miRNA:   3'- gCCGaC-GGCCGuGGCUCUa--------CCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 112055 0.67 0.762217
Target:  5'- gGGCUGCCGGCcuugacggcgcaGuuGAcGAUGGagaaCAUCa -3'
miRNA:   3'- gCCGACGGCCG------------UggCU-CUACCa---GUGG- -5'
28732 3' -59.3 NC_006146.1 + 117022 0.67 0.762217
Target:  5'- gGGCUacGCCcuaacgggGGCGCUGAGGgccaGcGUCGCCu -3'
miRNA:   3'- gCCGA--CGG--------CCGUGGCUCUa---C-CAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 74861 0.67 0.762217
Target:  5'- gGGCUucuugacgGCCGGCACCaugccGGUGG-CACa -3'
miRNA:   3'- gCCGA--------CGGCCGUGGcu---CUACCaGUGg -5'
28732 3' -59.3 NC_006146.1 + 120765 0.67 0.758543
Target:  5'- aGcGCUGgCGGCGCCucaugucccuggcGGA-GGUCGCCg -3'
miRNA:   3'- gC-CGACgGCCGUGGc------------UCUaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 132656 0.67 0.753
Target:  5'- aGGCacacaCGGCGCCGAGAcgGGUC-Ca -3'
miRNA:   3'- gCCGacg--GCCGUGGCUCUa-CCAGuGg -5'
28732 3' -59.3 NC_006146.1 + 169377 0.67 0.743684
Target:  5'- gGGCaggGCUGGCGCCGGGccg--CGCCc -3'
miRNA:   3'- gCCGa--CGGCCGUGGCUCuaccaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 170308 0.67 0.743684
Target:  5'- gGGCaggGCUGGCGCCGGGccg--CGCCc -3'
miRNA:   3'- gCCGa--CGGCCGUGGCUCuaccaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 89104 0.67 0.743684
Target:  5'- -uGCUaCCGGCACUGccccAGGUGG-CACCc -3'
miRNA:   3'- gcCGAcGGCCGUGGC----UCUACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 76927 0.67 0.743684
Target:  5'- gGGCUGCagccgGGUgaacuGCCGcuGGA-GGUCGCCu -3'
miRNA:   3'- gCCGACGg----CCG-----UGGC--UCUaCCAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 45114 0.67 0.743684
Target:  5'- cCGGCUcgGCCGGUgaccGCCGGGAgccuugGGcUUugCg -3'
miRNA:   3'- -GCCGA--CGGCCG----UGGCUCUa-----CC-AGugG- -5'
28732 3' -59.3 NC_006146.1 + 168445 0.67 0.743684
Target:  5'- gGGCaggGCUGGCGCCGGGccg--CGCCc -3'
miRNA:   3'- gCCGa--CGGCCGUGGCUCuaccaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 106470 0.67 0.743684
Target:  5'- aGGCUGUcuCGGCGCCGAGAccccaaguaucaUGuG-CACg -3'
miRNA:   3'- gCCGACG--GCCGUGGCUCU------------AC-CaGUGg -5'
28732 3' -59.3 NC_006146.1 + 167513 0.67 0.743684
Target:  5'- gGGCaggGCUGGCGCCGGGccg--CGCCc -3'
miRNA:   3'- gCCGa--CGGCCGUGGCUCuaccaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 125439 0.67 0.734277
Target:  5'- uGGCU-CUGGCACUacGAUGGUCAg- -3'
miRNA:   3'- gCCGAcGGCCGUGGcuCUACCAGUgg -5'
28732 3' -59.3 NC_006146.1 + 77924 0.67 0.734277
Target:  5'- gGGCgGCCucgcaGGUGCCGGG--GGUCGCUg -3'
miRNA:   3'- gCCGaCGG-----CCGUGGCUCuaCCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.