Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28734 | 5' | -47.8 | NC_006146.1 | + | 7910 | 0.71 | 0.964368 |
|
Target: 5'- -aGGaUAGCAUAUGCUA-CCCAGa-- -3' miRNA: 3'- aaCCcAUCGUAUACGAUaGGGUUaaa -5' |
|||||||
| 28734 | 5' | -47.8 | NC_006146.1 | + | 7832 | 0.69 | 0.989075 |
|
Target: 5'- -aGGaUAGCAUAUGCUA-CCCAc--- -3' miRNA: 3'- aaCCcAUCGUAUACGAUaGGGUuaaa -5' |
|||||||
| 28734 | 5' | -47.8 | NC_006146.1 | + | 7779 | 0.76 | 0.790182 |
|
Target: 5'- -aGGGUAGCAUAUGCUA-CCgAAa-- -3' miRNA: 3'- aaCCCAUCGUAUACGAUaGGgUUaaa -5' |
|||||||
| 28734 | 5' | -47.8 | NC_006146.1 | + | 7645 | 0.71 | 0.964368 |
|
Target: 5'- -aGGaUAGCAUAUGCUA-CCCAAc-- -3' miRNA: 3'- aaCCcAUCGUAUACGAUaGGGUUaaa -5' |
|||||||
| 28734 | 5' | -47.8 | NC_006146.1 | + | 7614 | 0.8 | 0.606302 |
|
Target: 5'- aUUGGGaUAGCAUAUGCUA-CCCAAc-- -3' miRNA: 3'- -AACCC-AUCGUAUACGAUaGGGUUaaa -5' |
|||||||
| 28734 | 5' | -47.8 | NC_006146.1 | + | 7505 | 0.66 | 0.999351 |
|
Target: 5'- -aGGaUAGCAUAUGCUAUCaaaaGGUUa -3' miRNA: 3'- aaCCcAUCGUAUACGAUAGgg--UUAAa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home