miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28736 5' -44.2 NC_006146.1 + 162812 0.92 0.279693
Target:  5'- -cGGGUAGCAUAUGCUAUCCaGAUAUa -3'
miRNA:   3'- aaUCCAUCGUAUACGAUAGGaUUAUA- -5'
28736 5' -44.2 NC_006146.1 + 163130 0.81 0.779376
Target:  5'- --cGGUAGCAUAUGCUAcCCUAAUu- -3'
miRNA:   3'- aauCCAUCGUAUACGAUaGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 163183 0.82 0.736611
Target:  5'- --cGGUAGCAUAUGCUuUCCUAAUu- -3'
miRNA:   3'- aauCCAUCGUAUACGAuAGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 163025 0.83 0.680685
Target:  5'- ---cGUAGCAUAUGCUAUCCUAAUu- -3'
miRNA:   3'- aaucCAUCGUAUACGAUAGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 162970 0.85 0.589184
Target:  5'- -cGGGUAGCAUAUaCUAUCCUAAUAg -3'
miRNA:   3'- aaUCCAUCGUAUAcGAUAGGAUUAUa -5'
28736 5' -44.2 NC_006146.1 + 163289 0.88 0.467088
Target:  5'- gUUGGGUAGCAUAUGCUAUCCcaauuuaggugggUAGUGUa -3'
miRNA:   3'- -AAUCCAUCGUAUACGAUAGG-------------AUUAUA- -5'
28736 5' -44.2 NC_006146.1 + 162942 0.88 0.457727
Target:  5'- gUUGGGaUAGCAUAUGCUAUCUUAAUAg -3'
miRNA:   3'- -AAUCC-AUCGUAUACGAUAGGAUUAUa -5'
28736 5' -44.2 NC_006146.1 + 163236 0.92 0.302491
Target:  5'- --cGGUAGCAUAUGCUAUCCUAAUu- -3'
miRNA:   3'- aauCCAUCGUAUACGAUAGGAUUAua -5'
28736 5' -44.2 NC_006146.1 + 162918 0.92 0.287137
Target:  5'- cUGGGUAGUAUAUGCUGUCCUAAa-- -3'
miRNA:   3'- aAUCCAUCGUAUACGAUAGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 162781 0.76 0.950236
Target:  5'- aUUAGGaUAGCAgAUGCUAUCCaGAUAa -3'
miRNA:   3'- -AAUCC-AUCGUaUACGAUAGGaUUAUa -5'
28736 5' -44.2 NC_006146.1 + 163406 0.76 0.962917
Target:  5'- ----aUAGCAUAUGCUAUCCUAcUAUa -3'
miRNA:   3'- aauccAUCGUAUACGAUAGGAUuAUA- -5'
28736 5' -44.2 NC_006146.1 + 163102 0.74 0.983394
Target:  5'- gUUGGGUAGUGUAUaCUAUCCUAGc-- -3'
miRNA:   3'- -AAUCCAUCGUAUAcGAUAGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 63244 0.66 0.999997
Target:  5'- -cGGGgGGCAUGUGaacGUCCUGAg-- -3'
miRNA:   3'- aaUCCaUCGUAUACga-UAGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 162864 0.67 0.99999
Target:  5'- uUGGaUAGCAUAUaCUAUCUUAAUAUu -3'
miRNA:   3'- aAUCcAUCGUAUAcGAUAGGAUUAUA- -5'
28736 5' -44.2 NC_006146.1 + 18365 0.67 0.999989
Target:  5'- --uGGUGGCA--UGCUcacccugGUCCUGGUGg -3'
miRNA:   3'- aauCCAUCGUauACGA-------UAGGAUUAUa -5'
28736 5' -44.2 NC_006146.1 + 64456 0.67 0.999979
Target:  5'- cUUGGGUGGC----GCUGUCCUGc--- -3'
miRNA:   3'- -AAUCCAUCGuauaCGAUAGGAUuaua -5'
28736 5' -44.2 NC_006146.1 + 161616 0.68 0.999901
Target:  5'- --cGGcAGUAUGUGCUAUCCa----- -3'
miRNA:   3'- aauCCaUCGUAUACGAUAGGauuaua -5'
28736 5' -44.2 NC_006146.1 + 127799 0.73 0.992851
Target:  5'- uUUAGGaAGCAggggGCUGUCCUGAa-- -3'
miRNA:   3'- -AAUCCaUCGUaua-CGAUAGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 163208 0.74 0.983394
Target:  5'- gUUGGGUAGUGUAUaCUAUCCUAGc-- -3'
miRNA:   3'- -AAUCCAUCGUAUAcGAUAGGAUUaua -5'
28736 5' -44.2 NC_006146.1 + 163155 0.74 0.983394
Target:  5'- gUUGGGUAGUGUAUaCUAUCCUAGc-- -3'
miRNA:   3'- -AAUCCAUCGUAUAcGAUAGGAUUaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.