miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 3' -58 NC_006146.1 + 123523 0.67 0.837313
Target:  5'- aCCCCAGGcGGGUcGCggGUGgCAaGGAGa -3'
miRNA:   3'- -GGGGUCC-CUCA-UGaaCGCgGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 123753 0.67 0.803979
Target:  5'- uCCUCAGGGAcagGCUcgUGCGCUACGc-- -3'
miRNA:   3'- -GGGGUCCCUca-UGA--ACGCGGUGCcuc -5'
28737 3' -58 NC_006146.1 + 124520 0.66 0.874967
Target:  5'- gCCCuGGcGAGggACggGgGCCugGGGGa -3'
miRNA:   3'- gGGGuCC-CUCa-UGaaCgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 128195 0.7 0.632464
Target:  5'- gCCCAGGGGG-----GCGCCGCGGc- -3'
miRNA:   3'- gGGGUCCCUCaugaaCGCGGUGCCuc -5'
28737 3' -58 NC_006146.1 + 130509 0.68 0.786397
Target:  5'- cCCCCGcGGGAGgcUACUacGCGCCggGCGGcGa -3'
miRNA:   3'- -GGGGU-CCCUC--AUGAa-CGCGG--UGCCuC- -5'
28737 3' -58 NC_006146.1 + 131480 0.71 0.622505
Target:  5'- aCCCAGGuGGGU-CUgggGUGCCAgGGAu -3'
miRNA:   3'- gGGGUCC-CUCAuGAa--CGCGGUgCCUc -5'
28737 3' -58 NC_006146.1 + 135110 0.66 0.852948
Target:  5'- uUCCCAGGGuuuGggUUUGCuCCGgCGGGGg -3'
miRNA:   3'- -GGGGUCCCu--CauGAACGcGGU-GCCUC- -5'
28737 3' -58 NC_006146.1 + 136826 0.66 0.881902
Target:  5'- cCCCCcGGGAcccccgGCcccGUGCCACGGGa -3'
miRNA:   3'- -GGGGuCCCUca----UGaa-CGCGGUGCCUc -5'
28737 3' -58 NC_006146.1 + 137029 0.73 0.486674
Target:  5'- aCCCCGGGGAGgagGCcggguggGgGCCugGGGu -3'
miRNA:   3'- -GGGGUCCCUCa--UGaa-----CgCGGugCCUc -5'
28737 3' -58 NC_006146.1 + 137216 0.71 0.592696
Target:  5'- aCCCCGGGGAGgaaGCcggguggGgGCCugGGGu -3'
miRNA:   3'- -GGGGUCCCUCa--UGaa-----CgCGGugCCUc -5'
28737 3' -58 NC_006146.1 + 138811 0.67 0.795258
Target:  5'- gCCCGGGGuuGGUgaGCUauuggGCGCC-CGGAc -3'
miRNA:   3'- gGGGUCCC--UCA--UGAa----CGCGGuGCCUc -5'
28737 3' -58 NC_006146.1 + 139496 0.67 0.820971
Target:  5'- aCCCgGGGGGGUGCcugGUGUUuaguaGGAGg -3'
miRNA:   3'- -GGGgUCCCUCAUGaa-CGCGGug---CCUC- -5'
28737 3' -58 NC_006146.1 + 141701 0.66 0.860485
Target:  5'- aCCCgguGGGGAGacaGCUgagggGgGCCGgGGAGg -3'
miRNA:   3'- gGGG---UCCCUCa--UGAa----CgCGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 142349 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 144048 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 145427 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 147126 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 148505 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 150204 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 151583 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.