miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 3' -58 NC_006146.1 + 22127 0.69 0.721163
Target:  5'- -aCCGGGGAucGUGCUguUGCGCCcCGGc- -3'
miRNA:   3'- ggGGUCCCU--CAUGA--ACGCGGuGCCuc -5'
28737 3' -58 NC_006146.1 + 156360 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 114716 0.66 0.877766
Target:  5'- aCCCGGGcccuggcggccGAGUAUcgGCgcauccucaaggacgGCCGCGGGGa -3'
miRNA:   3'- gGGGUCC-----------CUCAUGaaCG---------------CGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 48952 0.66 0.879844
Target:  5'- gCCUCAGGGAGUugugggagcgauugGCgaugagcacgUUGCuGaCCugGGAGg -3'
miRNA:   3'- -GGGGUCCCUCA--------------UG----------AACG-C-GGugCCUC- -5'
28737 3' -58 NC_006146.1 + 10396 0.68 0.777406
Target:  5'- gCUCAGGGuGGUGCUgUGCuaCACGGuGg -3'
miRNA:   3'- gGGGUCCC-UCAUGA-ACGcgGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 70989 0.66 0.881902
Target:  5'- aCCC--GGAGcccgcuCUUGCGCC-CGGGGg -3'
miRNA:   3'- gGGGucCCUCau----GAACGCGGuGCCUC- -5'
28737 3' -58 NC_006146.1 + 39872 0.68 0.786397
Target:  5'- gCCCgGGGGAGgagGCUgagGCugagcgGCCuGCGGGGc -3'
miRNA:   3'- -GGGgUCCCUCa--UGAa--CG------CGG-UGCCUC- -5'
28737 3' -58 NC_006146.1 + 124520 0.66 0.874967
Target:  5'- gCCCuGGcGAGggACggGgGCCugGGGGa -3'
miRNA:   3'- gGGGuCC-CUCa-UGaaCgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 95403 0.66 0.867826
Target:  5'- aCUUCAGGGGGUugUacaGCCAcCGGAu -3'
miRNA:   3'- -GGGGUCCCUCAugAacgCGGU-GCCUc -5'
28737 3' -58 NC_006146.1 + 145427 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 139496 0.67 0.820971
Target:  5'- aCCCgGGGGGGUGCcugGUGUUuaguaGGAGg -3'
miRNA:   3'- -GGGgUCCCUCAUGaa-CGCGGug---CCUC- -5'
28737 3' -58 NC_006146.1 + 123753 0.67 0.803979
Target:  5'- uCCUCAGGGAcagGCUcgUGCGCUACGc-- -3'
miRNA:   3'- -GGGGUCCCUca-UGA--ACGCGGUGCcuc -5'
28737 3' -58 NC_006146.1 + 108403 0.67 0.812552
Target:  5'- cCCCCAGGGccaGGUGC-UGCuGgCACGaGAa -3'
miRNA:   3'- -GGGGUCCC---UCAUGaACG-CgGUGC-CUc -5'
28737 3' -58 NC_006146.1 + 21429 0.72 0.524373
Target:  5'- uCCCCAuGGGGGaGCUcUGCuucuCCACGGAGc -3'
miRNA:   3'- -GGGGU-CCCUCaUGA-ACGc---GGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 137029 0.73 0.486674
Target:  5'- aCCCCGGGGAGgagGCcggguggGgGCCugGGGu -3'
miRNA:   3'- -GGGGUCCCUCa--UGaa-----CgCGGugCCUc -5'
28737 3' -58 NC_006146.1 + 109840 0.74 0.450308
Target:  5'- uCCCUGGGGGGUGg-UGUGCCAUagaggGGAGg -3'
miRNA:   3'- -GGGGUCCCUCAUgaACGCGGUG-----CCUC- -5'
28737 3' -58 NC_006146.1 + 162564 1.11 0.001634
Target:  5'- aCCCCAGGGAGUACUUGCGCCACGGAGg -3'
miRNA:   3'- -GGGGUCCCUCAUGAACGCGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 36216 0.67 0.795258
Target:  5'- uCCCC-GGGAGcGCaaGCcgGCCGgGGAGg -3'
miRNA:   3'- -GGGGuCCCUCaUGaaCG--CGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 113645 0.66 0.860485
Target:  5'- gCUCCGGGGGauGgcCUUGCuGaCCACGGGc -3'
miRNA:   3'- -GGGGUCCCU--CauGAACG-C-GGUGCCUc -5'
28737 3' -58 NC_006146.1 + 141701 0.66 0.860485
Target:  5'- aCCCgguGGGGAGacaGCUgagggGgGCCGgGGAGg -3'
miRNA:   3'- gGGG---UCCCUCa--UGAa----CgCGGUgCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.