Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28737 | 3' | -58 | NC_006146.1 | + | 100026 | 0.69 | 0.731723 |
Target: 5'- cCCCCGGGGAGcagcccugacaaaccACcUGCGCCG-GGAa -3' miRNA: 3'- -GGGGUCCCUCa--------------UGaACGCGGUgCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 40536 | 0.7 | 0.661318 |
Target: 5'- uCCCgGGGGAGcucucagccccucUGCacagugaagcUGCGCCACGGAc -3' miRNA: 3'- -GGGgUCCCUC-------------AUGa---------ACGCGGUGCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 120044 | 0.66 | 0.881902 |
Target: 5'- aCCCCGcGcGGAG-ACUgguggcgcugcUGCGCCgggaagACGGAGc -3' miRNA: 3'- -GGGGU-C-CCUCaUGA-----------ACGCGG------UGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 168475 | 0.66 | 0.860485 |
Target: 5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3' miRNA: 3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 161912 | 0.67 | 0.803979 |
Target: 5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3' miRNA: 3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 128195 | 0.7 | 0.632464 |
Target: 5'- gCCCAGGGGG-----GCGCCGCGGc- -3' miRNA: 3'- gGGGUCCCUCaugaaCGCGGUGCCuc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 167543 | 0.66 | 0.860485 |
Target: 5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3' miRNA: 3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 131480 | 0.71 | 0.622505 |
Target: 5'- aCCCAGGuGGGU-CUgggGUGCCAgGGAu -3' miRNA: 3'- gGGGUCC-CUCAuGAa--CGCGGUgCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 160123 | 0.74 | 0.44145 |
Target: 5'- cCCUCAGGGGGUAggUG-GCCAgGGGGu -3' miRNA: 3'- -GGGGUCCCUCAUgaACgCGGUgCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 161979 | 0.67 | 0.803979 |
Target: 5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3' miRNA: 3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 53329 | 0.66 | 0.874967 |
Target: 5'- gCCCGaGGAGgcCcgGCgGCCGCGGGGc -3' miRNA: 3'- gGGGUcCCUCauGaaCG-CGGUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 48971 | 0.69 | 0.711486 |
Target: 5'- uUCCCGGGGA-UGa--GCGUCugGGAGa -3' miRNA: 3'- -GGGGUCCCUcAUgaaCGCGGugCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 41263 | 0.69 | 0.69195 |
Target: 5'- uUCCCGGGcGGaGCacGCGcCCGCGGAGg -3' miRNA: 3'- -GGGGUCCcUCaUGaaCGC-GGUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 135110 | 0.66 | 0.852948 |
Target: 5'- uUCCCAGGGuuuGggUUUGCuCCGgCGGGGg -3' miRNA: 3'- -GGGGUCCCu--CauGAACGcGGU-GCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 169407 | 0.66 | 0.860485 |
Target: 5'- gCCCCucuccuGGGAGgccACgUGUGgaggcCCGCGGAGa -3' miRNA: 3'- -GGGGu-----CCCUCa--UGaACGC-----GGUGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 113645 | 0.66 | 0.860485 |
Target: 5'- gCUCCGGGGGauGgcCUUGCuGaCCACGGGc -3' miRNA: 3'- -GGGGUCCCU--CauGAACG-C-GGUGCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 141701 | 0.66 | 0.860485 |
Target: 5'- aCCCgguGGGGAGacaGCUgagggGgGCCGgGGAGg -3' miRNA: 3'- gGGG---UCCCUCa--UGAa----CgCGGUgCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 104657 | 0.68 | 0.749725 |
Target: 5'- cCCCCAccGuGGAGaaUGCcUGCGCCGCGauaGAGg -3' miRNA: 3'- -GGGGU--C-CCUC--AUGaACGCGGUGC---CUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 10396 | 0.68 | 0.777406 |
Target: 5'- gCUCAGGGuGGUGCUgUGCuaCACGGuGg -3' miRNA: 3'- gGGGUCCC-UCAUGA-ACGcgGUGCCuC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 161745 | 0.68 | 0.755339 |
Target: 5'- gCCCGGGGGuGgcgGCUgagguccgaggggGCGCCuggGCGGGGg -3' miRNA: 3'- gGGGUCCCU-Ca--UGAa------------CGCGG---UGCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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