Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28737 | 3' | -58 | NC_006146.1 | + | 75782 | 0.69 | 0.721163 |
Target: 5'- gCCCAGGGGGcucUACUcggGCGUCuCGGGc -3' miRNA: 3'- gGGGUCCCUC---AUGAa--CGCGGuGCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 22127 | 0.69 | 0.721163 |
Target: 5'- -aCCGGGGAucGUGCUguUGCGCCcCGGc- -3' miRNA: 3'- ggGGUCCCU--CAUGA--ACGCGGuGCCuc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 35208 | 0.69 | 0.730767 |
Target: 5'- gUCCCAGGGAGggaagaGgGCuCugGGAGa -3' miRNA: 3'- -GGGGUCCCUCaugaa-CgCG-GugCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 100026 | 0.69 | 0.731723 |
Target: 5'- cCCCCGGGGAGcagcccugacaaaccACcUGCGCCG-GGAa -3' miRNA: 3'- -GGGGUCCCUCa--------------UGaACGCGGUgCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 104657 | 0.68 | 0.749725 |
Target: 5'- cCCCCAccGuGGAGaaUGCcUGCGCCGCGauaGAGg -3' miRNA: 3'- -GGGGU--C-CCUC--AUGaACGCGGUGC---CUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 161745 | 0.68 | 0.755339 |
Target: 5'- gCCCGGGGGuGgcgGCUgagguccgaggggGCGCCuggGCGGGGg -3' miRNA: 3'- gGGGUCCCU-Ca--UGAa------------CGCGG---UGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 4952 | 0.68 | 0.759061 |
Target: 5'- gCCCCGGGGAccag--GgGCCACGaGAGc -3' miRNA: 3'- -GGGGUCCCUcaugaaCgCGGUGC-CUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 56317 | 0.68 | 0.759061 |
Target: 5'- gCCCAGGccGUAgcUGCGCCGCGaGAa -3' miRNA: 3'- gGGGUCCcuCAUgaACGCGGUGC-CUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 10396 | 0.68 | 0.777406 |
Target: 5'- gCUCAGGGuGGUGCUgUGCuaCACGGuGg -3' miRNA: 3'- gGGGUCCC-UCAUGA-ACGcgGUGCCuC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 39872 | 0.68 | 0.786397 |
Target: 5'- gCCCgGGGGAGgagGCUgagGCugagcgGCCuGCGGGGc -3' miRNA: 3'- -GGGgUCCCUCa--UGAa--CG------CGG-UGCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 45060 | 0.68 | 0.786397 |
Target: 5'- uCCCUAGGGGcgGCUgagGUGCCucgUGGGGa -3' miRNA: 3'- -GGGGUCCCUcaUGAa--CGCGGu--GCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 130509 | 0.68 | 0.786397 |
Target: 5'- cCCCCGcGGGAGgcUACUacGCGCCggGCGGcGa -3' miRNA: 3'- -GGGGU-CCCUC--AUGAa-CGCGG--UGCCuC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 138811 | 0.67 | 0.795258 |
Target: 5'- gCCCGGGGuuGGUgaGCUauuggGCGCC-CGGAc -3' miRNA: 3'- gGGGUCCC--UCA--UGAa----CGCGGuGCCUc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 36216 | 0.67 | 0.795258 |
Target: 5'- uCCCC-GGGAGcGCaaGCcgGCCGgGGAGg -3' miRNA: 3'- -GGGGuCCCUCaUGaaCG--CGGUgCCUC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 161845 | 0.67 | 0.803979 |
Target: 5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3' miRNA: 3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 161778 | 0.67 | 0.803979 |
Target: 5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3' miRNA: 3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 123753 | 0.67 | 0.803979 |
Target: 5'- uCCUCAGGGAcagGCUcgUGCGCUACGc-- -3' miRNA: 3'- -GGGGUCCCUca-UGA--ACGCGGUGCcuc -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 161979 | 0.67 | 0.803979 |
Target: 5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3' miRNA: 3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 161912 | 0.67 | 0.803979 |
Target: 5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3' miRNA: 3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5' |
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28737 | 3' | -58 | NC_006146.1 | + | 108403 | 0.67 | 0.812552 |
Target: 5'- cCCCCAGGGccaGGUGC-UGCuGgCACGaGAa -3' miRNA: 3'- -GGGGUCCC---UCAUGaACG-CgGUGC-CUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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