miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 3' -58 NC_006146.1 + 70989 0.66 0.881902
Target:  5'- aCCC--GGAGcccgcuCUUGCGCC-CGGGGg -3'
miRNA:   3'- gGGGucCCUCau----GAACGCGGuGCCUC- -5'
28737 3' -58 NC_006146.1 + 147126 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 144048 0.66 0.874967
Target:  5'- gUCCAGGGcc-GCcauuaUGCGCaCGCGGAGa -3'
miRNA:   3'- gGGGUCCCucaUGa----ACGCG-GUGCCUC- -5'
28737 3' -58 NC_006146.1 + 124520 0.66 0.874967
Target:  5'- gCCCuGGcGAGggACggGgGCCugGGGGa -3'
miRNA:   3'- gGGGuCC-CUCa-UGaaCgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 95403 0.66 0.867826
Target:  5'- aCUUCAGGGGGUugUacaGCCAcCGGAu -3'
miRNA:   3'- -GGGGUCCCUCAugAacgCGGU-GCCUc -5'
28737 3' -58 NC_006146.1 + 136826 0.66 0.881902
Target:  5'- cCCCCcGGGAcccccgGCcccGUGCCACGGGa -3'
miRNA:   3'- -GGGGuCCCUca----UGaa-CGCGGUGCCUc -5'
28737 3' -58 NC_006146.1 + 114716 0.66 0.877766
Target:  5'- aCCCGGGcccuggcggccGAGUAUcgGCgcauccucaaggacgGCCGCGGGGa -3'
miRNA:   3'- gGGGUCC-----------CUCAUGaaCG---------------CGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 161845 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 115233 0.67 0.837313
Target:  5'- aCCCAGGGAGcccaGCUgagagGC-CCAgGGAu -3'
miRNA:   3'- gGGGUCCCUCa---UGAa----CGcGGUgCCUc -5'
28737 3' -58 NC_006146.1 + 161778 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 102521 0.67 0.829227
Target:  5'- -aCCAcGGGAGUcACcagcacCGCCACGGGGa -3'
miRNA:   3'- ggGGU-CCCUCA-UGaac---GCGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 45662 0.67 0.820971
Target:  5'- aUCCAGGGAG-ACcgucucCGCCAgGGAGc -3'
miRNA:   3'- gGGGUCCCUCaUGaac---GCGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 161979 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 138811 0.67 0.795258
Target:  5'- gCCCGGGGuuGGUgaGCUauuggGCGCC-CGGAc -3'
miRNA:   3'- gGGGUCCC--UCA--UGAa----CGCGGuGCCUc -5'
28737 3' -58 NC_006146.1 + 36216 0.67 0.795258
Target:  5'- uCCCC-GGGAGcGCaaGCcgGCCGgGGAGg -3'
miRNA:   3'- -GGGGuCCCUCaUGaaCG--CGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 123753 0.67 0.803979
Target:  5'- uCCUCAGGGAcagGCUcgUGCGCUACGc-- -3'
miRNA:   3'- -GGGGUCCCUca-UGA--ACGCGGUGCcuc -5'
28737 3' -58 NC_006146.1 + 108403 0.67 0.812552
Target:  5'- cCCCCAGGGccaGGUGC-UGCuGgCACGaGAa -3'
miRNA:   3'- -GGGGUCCC---UCAUGaACG-CgGUGC-CUc -5'
28737 3' -58 NC_006146.1 + 139496 0.67 0.820971
Target:  5'- aCCCgGGGGGGUGCcugGUGUUuaguaGGAGg -3'
miRNA:   3'- -GGGgUCCCUCAUGaa-CGCGGug---CCUC- -5'
28737 3' -58 NC_006146.1 + 142349 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 145427 0.67 0.829227
Target:  5'- -gCCGGGcaggccGGGU-CUUGgGCCugGGAGg -3'
miRNA:   3'- ggGGUCC------CUCAuGAACgCGGugCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.