miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 3' -58 NC_006146.1 + 60143 0.69 0.69195
Target:  5'- aCCUgguGGGGGGUG--UGUGCCAgGGGGa -3'
miRNA:   3'- gGGG---UCCCUCAUgaACGCGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 64226 0.69 0.69195
Target:  5'- gCCCCAGGGAu--CccGUGCC-CGGGGa -3'
miRNA:   3'- -GGGGUCCCUcauGaaCGCGGuGCCUC- -5'
28737 3' -58 NC_006146.1 + 70989 0.66 0.881902
Target:  5'- aCCC--GGAGcccgcuCUUGCGCC-CGGGGg -3'
miRNA:   3'- gGGGucCCUCau----GAACGCGGuGCCUC- -5'
28737 3' -58 NC_006146.1 + 73555 0.69 0.711486
Target:  5'- uCCCCGGGcGGGUGgUUGUGgC-CGGAc -3'
miRNA:   3'- -GGGGUCC-CUCAUgAACGCgGuGCCUc -5'
28737 3' -58 NC_006146.1 + 75782 0.69 0.721163
Target:  5'- gCCCAGGGGGcucUACUcggGCGUCuCGGGc -3'
miRNA:   3'- gGGGUCCCUC---AUGAa--CGCGGuGCCUc -5'
28737 3' -58 NC_006146.1 + 78358 0.72 0.563131
Target:  5'- aCCCCAGGGuGUagccGC-UGC-CCAgGGAGg -3'
miRNA:   3'- -GGGGUCCCuCA----UGaACGcGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 92457 0.66 0.881902
Target:  5'- gCCUGGGGucugaauuggcgGGUAUaUGUGCC-CGGGGg -3'
miRNA:   3'- gGGGUCCC------------UCAUGaACGCGGuGCCUC- -5'
28737 3' -58 NC_006146.1 + 95403 0.66 0.867826
Target:  5'- aCUUCAGGGGGUugUacaGCCAcCGGAu -3'
miRNA:   3'- -GGGGUCCCUCAugAacgCGGU-GCCUc -5'
28737 3' -58 NC_006146.1 + 100026 0.69 0.731723
Target:  5'- cCCCCGGGGAGcagcccugacaaaccACcUGCGCCG-GGAa -3'
miRNA:   3'- -GGGGUCCCUCa--------------UGaACGCGGUgCCUc -5'
28737 3' -58 NC_006146.1 + 102521 0.67 0.829227
Target:  5'- -aCCAcGGGAGUcACcagcacCGCCACGGGGa -3'
miRNA:   3'- ggGGU-CCCUCA-UGaac---GCGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 104657 0.68 0.749725
Target:  5'- cCCCCAccGuGGAGaaUGCcUGCGCCGCGauaGAGg -3'
miRNA:   3'- -GGGGU--C-CCUC--AUGaACGCGGUGC---CUC- -5'
28737 3' -58 NC_006146.1 + 107094 0.69 0.69195
Target:  5'- gCCgGGGGAGUGggUGgGUCugGGAa -3'
miRNA:   3'- gGGgUCCCUCAUgaACgCGGugCCUc -5'
28737 3' -58 NC_006146.1 + 108403 0.67 0.812552
Target:  5'- cCCCCAGGGccaGGUGC-UGCuGgCACGaGAa -3'
miRNA:   3'- -GGGGUCCC---UCAUGaACG-CgGUGC-CUc -5'
28737 3' -58 NC_006146.1 + 109840 0.74 0.450308
Target:  5'- uCCCUGGGGGGUGg-UGUGCCAUagaggGGAGg -3'
miRNA:   3'- -GGGGUCCCUCAUgaACGCGGUG-----CCUC- -5'
28737 3' -58 NC_006146.1 + 113645 0.66 0.860485
Target:  5'- gCUCCGGGGGauGgcCUUGCuGaCCACGGGc -3'
miRNA:   3'- -GGGGUCCCU--CauGAACG-C-GGUGCCUc -5'
28737 3' -58 NC_006146.1 + 114716 0.66 0.877766
Target:  5'- aCCCGGGcccuggcggccGAGUAUcgGCgcauccucaaggacgGCCGCGGGGa -3'
miRNA:   3'- gGGGUCC-----------CUCAUGaaCG---------------CGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 115233 0.67 0.837313
Target:  5'- aCCCAGGGAGcccaGCUgagagGC-CCAgGGAu -3'
miRNA:   3'- gGGGUCCCUCa---UGAa----CGcGGUgCCUc -5'
28737 3' -58 NC_006146.1 + 115860 0.66 0.867826
Target:  5'- aCCCCGGGGugaaucuuGaGCUUG-GCCugGGcGa -3'
miRNA:   3'- -GGGGUCCCu-------CaUGAACgCGGugCCuC- -5'
28737 3' -58 NC_006146.1 + 119264 0.66 0.874967
Target:  5'- cCCCCuGGGAGUccagaGCcUGgaGCaCACGGAc -3'
miRNA:   3'- -GGGGuCCCUCA-----UGaACg-CG-GUGCCUc -5'
28737 3' -58 NC_006146.1 + 120044 0.66 0.881902
Target:  5'- aCCCCGcGcGGAG-ACUgguggcgcugcUGCGCCgggaagACGGAGc -3'
miRNA:   3'- -GGGGU-C-CCUCaUGA-----------ACGCGG------UGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.