miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 3' -58 NC_006146.1 + 162564 1.11 0.001634
Target:  5'- aCCCCAGGGAGUACUUGCGCCACGGAGg -3'
miRNA:   3'- -GGGGUCCCUCAUGAACGCGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 160123 0.74 0.44145
Target:  5'- cCCUCAGGGGGUAggUG-GCCAgGGGGu -3'
miRNA:   3'- -GGGGUCCCUCAUgaACgCGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 109840 0.74 0.450308
Target:  5'- uCCCUGGGGGGUGg-UGUGCCAUagaggGGAGg -3'
miRNA:   3'- -GGGGUCCCUCAUgaACGCGGUG-----CCUC- -5'
28737 3' -58 NC_006146.1 + 137029 0.73 0.486674
Target:  5'- aCCCCGGGGAGgagGCcggguggGgGCCugGGGu -3'
miRNA:   3'- -GGGGUCCCUCa--UGaa-----CgCGGugCCUc -5'
28737 3' -58 NC_006146.1 + 21429 0.72 0.524373
Target:  5'- uCCCCAuGGGGGaGCUcUGCuucuCCACGGAGc -3'
miRNA:   3'- -GGGGU-CCCUCaUGA-ACGc---GGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 56568 0.72 0.543639
Target:  5'- aCUCCAGGGuGGUGaugcagGCGCCugGGGa -3'
miRNA:   3'- -GGGGUCCC-UCAUgaa---CGCGGugCCUc -5'
28737 3' -58 NC_006146.1 + 78358 0.72 0.563131
Target:  5'- aCCCCAGGGuGUagccGC-UGC-CCAgGGAGg -3'
miRNA:   3'- -GGGGUCCCuCA----UGaACGcGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 137216 0.71 0.592696
Target:  5'- aCCCCGGGGAGgaaGCcggguggGgGCCugGGGu -3'
miRNA:   3'- -GGGGUCCCUCa--UGaa-----CgCGGugCCUc -5'
28737 3' -58 NC_006146.1 + 131480 0.71 0.622505
Target:  5'- aCCCAGGuGGGU-CUgggGUGCCAgGGAu -3'
miRNA:   3'- gGGGUCC-CUCAuGAa--CGCGGUgCCUc -5'
28737 3' -58 NC_006146.1 + 128195 0.7 0.632464
Target:  5'- gCCCAGGGGG-----GCGCCGCGGc- -3'
miRNA:   3'- gGGGUCCCUCaugaaCGCGGUGCCuc -5'
28737 3' -58 NC_006146.1 + 40536 0.7 0.661318
Target:  5'- uCCCgGGGGAGcucucagccccucUGCacagugaagcUGCGCCACGGAc -3'
miRNA:   3'- -GGGgUCCCUC-------------AUGa---------ACGCGGUGCCUc -5'
28737 3' -58 NC_006146.1 + 64226 0.69 0.69195
Target:  5'- gCCCCAGGGAu--CccGUGCC-CGGGGa -3'
miRNA:   3'- -GGGGUCCCUcauGaaCGCGGuGCCUC- -5'
28737 3' -58 NC_006146.1 + 60143 0.69 0.69195
Target:  5'- aCCUgguGGGGGGUG--UGUGCCAgGGGGa -3'
miRNA:   3'- gGGG---UCCCUCAUgaACGCGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 41263 0.69 0.69195
Target:  5'- uUCCCGGGcGGaGCacGCGcCCGCGGAGg -3'
miRNA:   3'- -GGGGUCCcUCaUGaaCGC-GGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 107094 0.69 0.69195
Target:  5'- gCCgGGGGAGUGggUGgGUCugGGAa -3'
miRNA:   3'- gGGgUCCCUCAUgaACgCGGugCCUc -5'
28737 3' -58 NC_006146.1 + 6377 0.69 0.700768
Target:  5'- gCCCUGGGGuccguuugguaccGGUccuCUUGgGCCAUGGGGu -3'
miRNA:   3'- -GGGGUCCC-------------UCAu--GAACgCGGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 56749 0.69 0.711486
Target:  5'- gCCCAGGGccaGCaUGCGCCuggucCGGAGc -3'
miRNA:   3'- gGGGUCCCucaUGaACGCGGu----GCCUC- -5'
28737 3' -58 NC_006146.1 + 153199 0.69 0.711486
Target:  5'- cCCCCAGGc---GCUUGgcCGCCACGGGc -3'
miRNA:   3'- -GGGGUCCcucaUGAAC--GCGGUGCCUc -5'
28737 3' -58 NC_006146.1 + 48971 0.69 0.711486
Target:  5'- uUCCCGGGGA-UGa--GCGUCugGGAGa -3'
miRNA:   3'- -GGGGUCCCUcAUgaaCGCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 73555 0.69 0.711486
Target:  5'- uCCCCGGGcGGGUGgUUGUGgC-CGGAc -3'
miRNA:   3'- -GGGGUCC-CUCAUgAACGCgGuGCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.