miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28737 3' -58 NC_006146.1 + 160123 0.74 0.44145
Target:  5'- cCCUCAGGGGGUAggUG-GCCAgGGGGu -3'
miRNA:   3'- -GGGGUCCCUCAUgaACgCGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 161912 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 45662 0.67 0.820971
Target:  5'- aUCCAGGGAG-ACcgucucCGCCAgGGAGc -3'
miRNA:   3'- gGGGUCCCUCaUGaac---GCGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 120044 0.66 0.881902
Target:  5'- aCCCCGcGcGGAG-ACUgguggcgcugcUGCGCCgggaagACGGAGc -3'
miRNA:   3'- -GGGGU-C-CCUCaUGA-----------ACGCGG------UGCCUC- -5'
28737 3' -58 NC_006146.1 + 41263 0.69 0.69195
Target:  5'- uUCCCGGGcGGaGCacGCGcCCGCGGAGg -3'
miRNA:   3'- -GGGGUCCcUCaUGaaCGC-GGUGCCUC- -5'
28737 3' -58 NC_006146.1 + 60143 0.69 0.69195
Target:  5'- aCCUgguGGGGGGUG--UGUGCCAgGGGGa -3'
miRNA:   3'- gGGG---UCCCUCAUgaACGCGGUgCCUC- -5'
28737 3' -58 NC_006146.1 + 48971 0.69 0.711486
Target:  5'- uUCCCGGGGA-UGa--GCGUCugGGAGa -3'
miRNA:   3'- -GGGGUCCCUcAUgaaCGCGGugCCUC- -5'
28737 3' -58 NC_006146.1 + 153199 0.69 0.711486
Target:  5'- cCCCCAGGc---GCUUGgcCGCCACGGGc -3'
miRNA:   3'- -GGGGUCCcucaUGAAC--GCGGUGCCUc -5'
28737 3' -58 NC_006146.1 + 4952 0.68 0.759061
Target:  5'- gCCCCGGGGAccag--GgGCCACGaGAGc -3'
miRNA:   3'- -GGGGUCCCUcaugaaCgCGGUGC-CUC- -5'
28737 3' -58 NC_006146.1 + 161845 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 45060 0.68 0.786397
Target:  5'- uCCCUAGGGGcgGCUgagGUGCCucgUGGGGa -3'
miRNA:   3'- -GGGGUCCCUcaUGAa--CGCGGu--GCCUC- -5'
28737 3' -58 NC_006146.1 + 100026 0.69 0.731723
Target:  5'- cCCCCGGGGAGcagcccugacaaaccACcUGCGCCG-GGAa -3'
miRNA:   3'- -GGGGUCCCUCa--------------UGaACGCGGUgCCUc -5'
28737 3' -58 NC_006146.1 + 131480 0.71 0.622505
Target:  5'- aCCCAGGuGGGU-CUgggGUGCCAgGGAu -3'
miRNA:   3'- gGGGUCC-CUCAuGAa--CGCGGUgCCUc -5'
28737 3' -58 NC_006146.1 + 130509 0.68 0.786397
Target:  5'- cCCCCGcGGGAGgcUACUacGCGCCggGCGGcGa -3'
miRNA:   3'- -GGGGU-CCCUC--AUGAa-CGCGG--UGCCuC- -5'
28737 3' -58 NC_006146.1 + 128195 0.7 0.632464
Target:  5'- gCCCAGGGGG-----GCGCCGCGGc- -3'
miRNA:   3'- gGGGUCCCUCaugaaCGCGGUGCCuc -5'
28737 3' -58 NC_006146.1 + 35208 0.69 0.730767
Target:  5'- gUCCCAGGGAGggaagaGgGCuCugGGAGa -3'
miRNA:   3'- -GGGGUCCCUCaugaa-CgCG-GugCCUC- -5'
28737 3' -58 NC_006146.1 + 161778 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 161979 0.67 0.803979
Target:  5'- gCCCCGuGGGAG-ACcgGCuCCACGGuGg -3'
miRNA:   3'- -GGGGU-CCCUCaUGaaCGcGGUGCCuC- -5'
28737 3' -58 NC_006146.1 + 40536 0.7 0.661318
Target:  5'- uCCCgGGGGAGcucucagccccucUGCacagugaagcUGCGCCACGGAc -3'
miRNA:   3'- -GGGgUCCCUC-------------AUGa---------ACGCGGUGCCUc -5'
28737 3' -58 NC_006146.1 + 64226 0.69 0.69195
Target:  5'- gCCCCAGGGAu--CccGUGCC-CGGGGa -3'
miRNA:   3'- -GGGGUCCCUcauGaaCGCGGuGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.